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J9VZ63

- J9VZ63_LACBU

UniProt

J9VZ63 - J9VZ63_LACBU

Protein

Xylose isomerase

Gene

xylA

Organism
Lactobacillus buchneri CD034
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 14 (01 Oct 2014)
      Sequence version 1 (28 Nov 2012)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    D-xylopyranose = D-xylulose.UniRule annotationSAAS annotation

    Cofactori

    Binds 2 magnesium ions per subunit.UniRule annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei100 – 1001UniRule annotation
    Active sitei103 – 1031UniRule annotation
    Metal bindingi231 – 2311Magnesium 1UniRule annotation
    Metal bindingi267 – 2671Magnesium 1UniRule annotation
    Metal bindingi267 – 2671Magnesium 2UniRule annotation
    Metal bindingi270 – 2701Magnesium 2UniRule annotation
    Metal bindingi295 – 2951Magnesium 1UniRule annotation
    Metal bindingi306 – 3061Magnesium 2UniRule annotation
    Metal bindingi308 – 3081Magnesium 2UniRule annotation
    Metal bindingi339 – 3391Magnesium 1UniRule annotation

    GO - Molecular functioni

    1. magnesium ion binding Source: UniProtKB-HAMAP
    2. xylose isomerase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. D-xylose metabolic process Source: UniProtKB-HAMAP
    2. pentose-phosphate shunt Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    IsomeraseUniRule annotationSAAS annotationImported

    Keywords - Biological processi

    Carbohydrate metabolism, Pentose shuntUniRule annotationSAAS annotation, Xylose metabolismUniRule annotationSAAS annotation

    Keywords - Ligandi

    MagnesiumUniRule annotationSAAS annotation, Metal-bindingUniRule annotationSAAS annotation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Xylose isomeraseUniRule annotation (EC:5.3.1.5UniRule annotation)
    Gene namesi
    Name:xylAUniRule annotationImported
    ORF Names:LBUCD034_0429Imported
    OrganismiLactobacillus buchneri CD034Imported
    Taxonomic identifieri1071400 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesBacilliLactobacillalesLactobacillaceaeLactobacillus
    ProteomesiUP000007332: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotationSAAS annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    CytoplasmUniRule annotationSAAS annotation

    Interactioni

    Subunit structurei

    Homotetramer.UniRule annotationSAAS annotation

    Structurei

    3D structure databases

    ProteinModelPortaliJ9VZ63.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the xylose isomerase family.UniRule annotation

    Phylogenomic databases

    KOiK01805.

    Family and domain databases

    Gene3Di3.20.20.150. 1 hit.
    HAMAPiMF_00455. Xylose_isom_A.
    InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
    IPR013452. Xylose_isom_bac.
    IPR001998. Xylose_isomerase.
    [Graphical view]
    PfamiPF01261. AP_endonuc_2. 1 hit.
    [Graphical view]
    PRINTSiPR00688. XYLOSISMRASE.
    SUPFAMiSSF51658. SSF51658. 1 hit.
    TIGRFAMsiTIGR02630. xylose_isom_A. 1 hit.
    PROSITEiPS51415. XYLOSE_ISOMERASE. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    J9VZ63-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSYWNVDKIK YVGTGEKKSG LGFQYYNPDE VVGGKKMRDW LRFAVAYWHT    50
    FDQRLVDPFG DGTAIRPYDK YTDPMDQALA KVDAAFEFYD KLGVDFLCFH 100
    DRDLAPEGDT LRETNRNLDK VVDKIVENQK TSGMKVLWNT SNLFTNPRFV 150
    EGAGTSPYAD IFAYSAAQLK HSLEIGKRVG SENYVFWGGR EGYESLWNTD 200
    MKREQEHAAK LFHMAKDYAN EIGFDAQMLL EPKPKEPTTH QYDFDAATTI 250
    AFMKEYGLDK DFKLNLEGNH ANLAGHTYQH EIRVAREAGL LGSLDANQGD 300
    KLIGWDIDEY PSNLYETTAA MTEVVENGSI GPRGGLNFDA KPRRSSFEPN 350
    DLFYGHIVGM DSFAAGLRVA VAMKNDGVLD DIVKNRYSSF DSGIGADIES 400
    GKASMADLEN YSLDKTQKDL RDATHSDHLE EIKDTINHYI IQTLK 445
    Length:445
    Mass (Da):50,266
    Last modified:November 28, 2012 - v1
    Checksum:i52DEC5B25A793D73
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003043 Genomic DNA. Translation: AFR99528.1.
    RefSeqiWP_013727223.1. NC_018610.1.
    YP_006725111.1. NC_018610.1.

    Genome annotation databases

    EnsemblBacteriaiAFR99528; AFR99528; LBUCD034_0429.
    GeneIDi13655415.
    KEGGilbn:LBUCD034_0429.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003043 Genomic DNA. Translation: AFR99528.1 .
    RefSeqi WP_013727223.1. NC_018610.1.
    YP_006725111.1. NC_018610.1.

    3D structure databases

    ProteinModelPortali J9VZ63.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AFR99528 ; AFR99528 ; LBUCD034_0429 .
    GeneIDi 13655415.
    KEGGi lbn:LBUCD034_0429.

    Phylogenomic databases

    KOi K01805.

    Family and domain databases

    Gene3Di 3.20.20.150. 1 hit.
    HAMAPi MF_00455. Xylose_isom_A.
    InterProi IPR013022. Xyl_isomerase-like_TIM-brl.
    IPR013452. Xylose_isom_bac.
    IPR001998. Xylose_isomerase.
    [Graphical view ]
    Pfami PF01261. AP_endonuc_2. 1 hit.
    [Graphical view ]
    PRINTSi PR00688. XYLOSISMRASE.
    SUPFAMi SSF51658. SSF51658. 1 hit.
    TIGRFAMsi TIGR02630. xylose_isom_A. 1 hit.
    PROSITEi PS51415. XYLOSE_ISOMERASE. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage."
      Heinl S., Wibberg D., Eikmeyer F., Szczepanowski R., Blom J., Linke B., Goesmann A., Grabherr R., Schwab H., Puhler A., Schluter A.
      J. Biotechnol. 161:153-166(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: CD034Imported.

    Entry informationi

    Entry nameiJ9VZ63_LACBU
    AccessioniPrimary (citable) accession number: J9VZ63
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 28, 2012
    Last sequence update: November 28, 2012
    Last modified: October 1, 2014
    This is version 14 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3