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J9VZ63 (J9VZ63_LACBU) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 12. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length445 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

D-xylopyranose = D-xylulose. RuleBase RU000609 HAMAP-Rule MF_00455 SAAS SAAS001998

Cofactor

Binds 2 magnesium ions per subunit By similarity. HAMAP-Rule MF_00455

Subunit structure

Homotetramer By similarity. RuleBase RU000610 HAMAP-Rule MF_00455 SAAS SAAS001998

Subcellular location

Cytoplasm By similarity RuleBase RU000610 SAAS SAAS001998 HAMAP-Rule MF_00455.

Sequence similarities

Belongs to the xylose isomerase family. HAMAP-Rule MF_00455

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1001 By similarity HAMAP-Rule MF_00455
Active site1031 By similarity HAMAP-Rule MF_00455
Metal binding2311Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding2671Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding2671Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding2701Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding2951Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding3061Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding3081Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding3391Magnesium 1 By similarity HAMAP-Rule MF_00455

Sequences

Sequence LengthMass (Da)Tools
J9VZ63 [UniParc].

Last modified November 28, 2012. Version 1.
Checksum: 52DEC5B25A793D73

FASTA44550,266
        10         20         30         40         50         60 
MSYWNVDKIK YVGTGEKKSG LGFQYYNPDE VVGGKKMRDW LRFAVAYWHT FDQRLVDPFG 

        70         80         90        100        110        120 
DGTAIRPYDK YTDPMDQALA KVDAAFEFYD KLGVDFLCFH DRDLAPEGDT LRETNRNLDK 

       130        140        150        160        170        180 
VVDKIVENQK TSGMKVLWNT SNLFTNPRFV EGAGTSPYAD IFAYSAAQLK HSLEIGKRVG 

       190        200        210        220        230        240 
SENYVFWGGR EGYESLWNTD MKREQEHAAK LFHMAKDYAN EIGFDAQMLL EPKPKEPTTH 

       250        260        270        280        290        300 
QYDFDAATTI AFMKEYGLDK DFKLNLEGNH ANLAGHTYQH EIRVAREAGL LGSLDANQGD 

       310        320        330        340        350        360 
KLIGWDIDEY PSNLYETTAA MTEVVENGSI GPRGGLNFDA KPRRSSFEPN DLFYGHIVGM 

       370        380        390        400        410        420 
DSFAAGLRVA VAMKNDGVLD DIVKNRYSSF DSGIGADIES GKASMADLEN YSLDKTQKDL 

       430        440 
RDATHSDHLE EIKDTINHYI IQTLK 

« Hide

References

[1]"Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage."
Heinl S., Wibberg D., Eikmeyer F., Szczepanowski R., Blom J., Linke B., Goesmann A., Grabherr R., Schwab H., Puhler A., Schluter A.
J. Biotechnol. 161:153-166(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CD034 EMBL AFR99528.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP003043 Genomic DNA. Translation: AFR99528.1.
RefSeqYP_006725111.1. NC_018610.1.

3D structure databases

ProteinModelPortalJ9VZ63.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFR99528; AFR99528; LBUCD034_0429.
GeneID13655415.
KEGGlbn:LBUCD034_0429.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01805.

Family and domain databases

Gene3D3.20.20.150. 1 hit.
HAMAPMF_00455. Xylose_isom_A.
InterProIPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSPR00688. XYLOSISMRASE.
SUPFAMSSF51658. SSF51658. 1 hit.
TIGRFAMsTIGR02630. xylose_isom_A. 1 hit.
PROSITEPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameJ9VZ63_LACBU
AccessionPrimary (citable) accession number: J9VZ63
Entry history
Integrated into UniProtKB/TrEMBL: November 28, 2012
Last sequence update: November 28, 2012
Last modified: June 11, 2014
This is version 12 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)