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J9UB96 (J9UB96_BRAPL) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 5. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Elongation factor Tu HAMAP-Rule MF_00118
Short name=EF-Tu HAMAP-Rule MF_00118
Gene names
Name:el-tu EMBL AFR69686.1
Synonyms:tuf HAMAP-Rule MF_00118
ORF Names:B2904_orf330 EMBL AFR69686.1
OrganismBrachyspira pilosicoli B2904 EMBL AFR69686.1
Taxonomic identifier1133568 [NCBI]
Taxonomic lineageBacteria › Spirochaetes › Spirochaetales › Brachyspiraceae › Brachyspira ›

Protein attributes

Sequence length408 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis By similarity. RuleBase RU000325 HAMAP-Rule MF_00118

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00118

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00118.

Sequence similarities

Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily. RuleBase RU000325 HAMAP-Rule MF_00118

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding19 – 268GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding88 – 925GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding143 – 1464GTP By similarity HAMAP-Rule MF_00118

Sequences

Sequence LengthMass (Da)Tools
J9UB96 [UniParc].

Last modified November 28, 2012. Version 1.
Checksum: 53FE904F3CC28931

FASTA40844,463
        10         20         30         40         50         60 
MAKGTYEGTK THVNVGTIGH VDHGKTTLTS AITAVSSAMF PATVQKVAYD SVAKASESQG 

        70         80         90        100        110        120 
RRDPTKILTI ATSHVEYESD NRHYAHVDCP GHADYIKNMI TGAAQMDGAI LVVSAEDGVM 

       130        140        150        160        170        180 
PQTKEHVLLS RQVGVNYIVV FLNKCDKLDD PEMAEIVEAE VVDVLDHYGF DGSKTPIIRG 

       190        200        210        220        230        240 
SAIKAIQAIE AGKDPRTDPD CKCIIDLLNA LDTYIPDPVR ETDKDFLMSI EDVYSIPGRG 

       250        260        270        280        290        300 
TVVTGRIERG QIKKGDEVEI VGIRPTKKTT CTGVEMFKKE VVGIAGYNVG CLLRGIERKE 

       310        320        330        340        350        360 
VERGQVLAKP GTITPHKKFE AEVYILKKEE GGRHSGFVSG YRPQMYFRTT DVTGVINLPE 

       370        380        390        400 
GSPMIMPGDN ANLTIELITP IAMEEKQRFA IREGGKTVGN GVVTKILE

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References

[1]"Comparative genomics of Brachyspira pilosicoli strains: genome rearrangements, reductions and correlation of genetic compliment with phenotypic diversity."
Mappley L.J., Black M.L., Abuoun M., Darby A.C., Woodward M.J., Parkhill J., Turner A.K., Bellgard M.I., La T., Phillips N.D., La Ragione R.M., Hampson D.J.
BMC Genomics 13:454-454(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: B2904 EMBL AFR69686.1.
[2]Mappley L., Black M.L.
Submitted (APR-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: B2904 EMBL AFR69686.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP003490 Genomic DNA. Translation: AFR69686.1.
RefSeqYP_006706434.1. NC_018607.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFR69686; AFR69686; B2904_orf330.
GeneID13635555.
KEGGbpj:B2904_orf330.

Phylogenomic databases

KOK02358.

Family and domain databases

HAMAPMF_00118_B. EF_Tu_B.
InterProIPR000795. EF_GTP-bd_dom.
IPR005225. Small_GTP-bd_dom.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
IPR009000. Transl_elong_init/rib_B-barrel.
[Graphical view]
PfamPF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSPR00315. ELONGATNFCT.
SUPFAMSSF50465. Elong_init_C. 1 hit.
SSF50447. Translat_factor. 1 hit.
TIGRFAMsTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
ProtoNetSearch...

Entry information

Entry nameJ9UB96_BRAPL
AccessionPrimary (citable) accession number: J9UB96
Entry history
Integrated into UniProtKB/TrEMBL: November 28, 2012
Last sequence update: November 28, 2012
Last modified: April 3, 2013
This is version 5 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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