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J9SQC7

- J9SQC7_9ACTO

UniProt

J9SQC7 - J9SQC7_9ACTO

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

KTR9_4500

Organism
Gordonia sp. KTR9
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 11 (01 Oct 2014)
      Sequence version 1 (28 Nov 2012)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported
    Gene namesi
    ORF Names:KTR9_4500Imported
    OrganismiGordonia sp. KTR9Imported
    Taxonomic identifieri337191 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeGordoniaceaeGordonia
    ProteomesiUP000003281: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    J9SQC7-1 [UniParc]FASTAAdd to Basket

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    MAGGEILEVD GRRISITNLS KVLYPATGTR KFEVIDYYSR IADVLLPHVR    50
    NRLITRKRWP NGVESTPFFE KNVPESAPEW IRRHGIQHSE RVISYAMADD 100
    RATLVWLAQM AVLEIHTPQW RLPMGPDGAP MANRIVFDLD PGPRVPLHRT 150
    AEVACEIRNW LGGATTYPVT SGGKGIHLYA RLPKPVTSDA ARKVAQEVAN 200
    EFARQHSDFI TAKMSKSLRD DKVFIDWSQN NAAKTTLAPY SLRGREQPWV 250
    AAPRTWEEME DPKLSQLLYT EVLDRVDEFG DLLDGLDDPY RDADDGGSEP 300
    VVEPAAGQVI NLKEYRRKRD QSKTPEPFGD EVYRQRVESE SPSDEPDSTD 350
    SPTDRAPIFV IQEHHARRLH YDFRLEHDGV LVSWAVPKNL PTDPDQNRLA 400
    VQTEDHPMDY ADFEGDIPAG EYGGGHVSIW DKGTFELEKW RDKEVIVRLH 450
    GERVQGRYAL IRTGEKNWLA HLMSDEPRPI VPDSLTDPRP MLATDESIDG 500
    LNGRDWAFEG KWDGYRLLIR SVGGDFRLTS RSGIDMTADF PELAGLADDL 550
    GLMDVVLDGE VVAIDSSGRT NFTLLTSRRH TDEPYALRLH LFDILFLNGS 600
    SLLRKPWSVR RELLEELAPA FRNSAFVEVP PLLPGPGSAA VEYSREHNLE 650
    GVVAKRRNSV YQQGRRSTTW LKHKNWSDIE VVVGGYRPGR GNRAHTIGSL 700
    LIGLPEETGL RYVGRVGTGF TDAQLRSLAE ELGPLEISRS PFLDKLDRPV 750
    ESSAVWVLPK IVGEVRFMDW TTAGHLRHPS WRGIRRDKLP GDL 793
    Length:793
    Mass (Da):89,525
    Last modified:November 28, 2012 - v1
    Checksum:i749BD71A280A6697
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002907 Genomic DNA. Translation: AFR51104.1.
    RefSeqiWP_014928512.1. NC_018581.1.
    YP_006671287.1. NC_018581.1.

    Genome annotation databases

    EnsemblBacteriaiAFR51104; AFR51104; KTR9_4500.
    GeneIDi13568454.
    KEGGigor:KTR9_4500.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002907 Genomic DNA. Translation: AFR51104.1 .
    RefSeqi WP_014928512.1. NC_018581.1.
    YP_006671287.1. NC_018581.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AFR51104 ; AFR51104 ; KTR9_4500 .
    GeneIDi 13568454.
    KEGGi gor:KTR9_4500.

    Phylogenomic databases

    KOi K01971.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genomic and transcriptomic studies of an RDX (hexahydro-1,3,5-trinitro-1,3,5-triazine)-degrading actinobacterium."
      Chen H.P., Zhu S.H., Casabon I., Hallam S.J., Crocker F.H., Mohn W.W., Indest K.J., Eltis L.D.
      Appl. Environ. Microbiol. 78:7798-7800(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: KTR9Imported.

    Entry informationi

    Entry nameiJ9SQC7_9ACTO
    AccessioniPrimary (citable) accession number: J9SQC7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 28, 2012
    Last sequence update: November 28, 2012
    Last modified: October 1, 2014
    This is version 11 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3