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J9SQC7

- J9SQC7_9ACTO

UniProt

J9SQC7 - J9SQC7_9ACTO

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Protein
Submitted name: ATP-dependent DNA ligase
Gene
KTR9_4500
Organism
Gordonia sp. KTR9
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
ORF Names:KTR9_4500Imported
OrganismiGordonia sp. KTR9Imported
Taxonomic identifieri337191 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeGordoniaceaeGordonia
ProteomesiUP000003281: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

J9SQC7-1 [UniParc]FASTAAdd to Basket

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MAGGEILEVD GRRISITNLS KVLYPATGTR KFEVIDYYSR IADVLLPHVR    50
NRLITRKRWP NGVESTPFFE KNVPESAPEW IRRHGIQHSE RVISYAMADD 100
RATLVWLAQM AVLEIHTPQW RLPMGPDGAP MANRIVFDLD PGPRVPLHRT 150
AEVACEIRNW LGGATTYPVT SGGKGIHLYA RLPKPVTSDA ARKVAQEVAN 200
EFARQHSDFI TAKMSKSLRD DKVFIDWSQN NAAKTTLAPY SLRGREQPWV 250
AAPRTWEEME DPKLSQLLYT EVLDRVDEFG DLLDGLDDPY RDADDGGSEP 300
VVEPAAGQVI NLKEYRRKRD QSKTPEPFGD EVYRQRVESE SPSDEPDSTD 350
SPTDRAPIFV IQEHHARRLH YDFRLEHDGV LVSWAVPKNL PTDPDQNRLA 400
VQTEDHPMDY ADFEGDIPAG EYGGGHVSIW DKGTFELEKW RDKEVIVRLH 450
GERVQGRYAL IRTGEKNWLA HLMSDEPRPI VPDSLTDPRP MLATDESIDG 500
LNGRDWAFEG KWDGYRLLIR SVGGDFRLTS RSGIDMTADF PELAGLADDL 550
GLMDVVLDGE VVAIDSSGRT NFTLLTSRRH TDEPYALRLH LFDILFLNGS 600
SLLRKPWSVR RELLEELAPA FRNSAFVEVP PLLPGPGSAA VEYSREHNLE 650
GVVAKRRNSV YQQGRRSTTW LKHKNWSDIE VVVGGYRPGR GNRAHTIGSL 700
LIGLPEETGL RYVGRVGTGF TDAQLRSLAE ELGPLEISRS PFLDKLDRPV 750
ESSAVWVLPK IVGEVRFMDW TTAGHLRHPS WRGIRRDKLP GDL 793
Length:793
Mass (Da):89,525
Last modified:November 28, 2012 - v1
Checksum:i749BD71A280A6697
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002907 Genomic DNA. Translation: AFR51104.1.
RefSeqiWP_014928512.1. NC_018581.1.
YP_006671287.1. NC_018581.1.

Genome annotation databases

EnsemblBacteriaiAFR51104; AFR51104; KTR9_4500.
GeneIDi13568454.
KEGGigor:KTR9_4500.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002907 Genomic DNA. Translation: AFR51104.1 .
RefSeqi WP_014928512.1. NC_018581.1.
YP_006671287.1. NC_018581.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AFR51104 ; AFR51104 ; KTR9_4500 .
GeneIDi 13568454.
KEGGi gor:KTR9_4500.

Phylogenomic databases

KOi K01971.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genomic and transcriptomic studies of an RDX (hexahydro-1,3,5-trinitro-1,3,5-triazine)-degrading actinobacterium."
    Chen H.P., Zhu S.H., Casabon I., Hallam S.J., Crocker F.H., Mohn W.W., Indest K.J., Eltis L.D.
    Appl. Environ. Microbiol. 78:7798-7800(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: KTR9Imported.

Entry informationi

Entry nameiJ9SQC7_9ACTO
AccessioniPrimary (citable) accession number: J9SQC7
Entry historyi
Integrated into UniProtKB/TrEMBL: November 28, 2012
Last sequence update: November 28, 2012
Last modified: September 3, 2014
This is version 10 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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