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J9SQC7 (J9SQC7_9ACTO) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 9. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
ORF Names:KTR9_4500 EMBL AFR51104.1
OrganismGordonia sp. KTR9 [Complete proteome] EMBL AFR51104.1
Taxonomic identifier337191 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeGordoniaceaeGordonia

Protein attributes

Sequence length793 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
J9SQC7 [UniParc].

Last modified November 28, 2012. Version 1.
Checksum: 749BD71A280A6697

FASTA79389,525
        10         20         30         40         50         60 
MAGGEILEVD GRRISITNLS KVLYPATGTR KFEVIDYYSR IADVLLPHVR NRLITRKRWP 

        70         80         90        100        110        120 
NGVESTPFFE KNVPESAPEW IRRHGIQHSE RVISYAMADD RATLVWLAQM AVLEIHTPQW 

       130        140        150        160        170        180 
RLPMGPDGAP MANRIVFDLD PGPRVPLHRT AEVACEIRNW LGGATTYPVT SGGKGIHLYA 

       190        200        210        220        230        240 
RLPKPVTSDA ARKVAQEVAN EFARQHSDFI TAKMSKSLRD DKVFIDWSQN NAAKTTLAPY 

       250        260        270        280        290        300 
SLRGREQPWV AAPRTWEEME DPKLSQLLYT EVLDRVDEFG DLLDGLDDPY RDADDGGSEP 

       310        320        330        340        350        360 
VVEPAAGQVI NLKEYRRKRD QSKTPEPFGD EVYRQRVESE SPSDEPDSTD SPTDRAPIFV 

       370        380        390        400        410        420 
IQEHHARRLH YDFRLEHDGV LVSWAVPKNL PTDPDQNRLA VQTEDHPMDY ADFEGDIPAG 

       430        440        450        460        470        480 
EYGGGHVSIW DKGTFELEKW RDKEVIVRLH GERVQGRYAL IRTGEKNWLA HLMSDEPRPI 

       490        500        510        520        530        540 
VPDSLTDPRP MLATDESIDG LNGRDWAFEG KWDGYRLLIR SVGGDFRLTS RSGIDMTADF 

       550        560        570        580        590        600 
PELAGLADDL GLMDVVLDGE VVAIDSSGRT NFTLLTSRRH TDEPYALRLH LFDILFLNGS 

       610        620        630        640        650        660 
SLLRKPWSVR RELLEELAPA FRNSAFVEVP PLLPGPGSAA VEYSREHNLE GVVAKRRNSV 

       670        680        690        700        710        720 
YQQGRRSTTW LKHKNWSDIE VVVGGYRPGR GNRAHTIGSL LIGLPEETGL RYVGRVGTGF 

       730        740        750        760        770        780 
TDAQLRSLAE ELGPLEISRS PFLDKLDRPV ESSAVWVLPK IVGEVRFMDW TTAGHLRHPS 

       790 
WRGIRRDKLP GDL 

« Hide

References

[1]"Genomic and transcriptomic studies of an RDX (hexahydro-1,3,5-trinitro-1,3,5-triazine)-degrading actinobacterium."
Chen H.P., Zhu S.H., Casabon I., Hallam S.J., Crocker F.H., Mohn W.W., Indest K.J., Eltis L.D.
Appl. Environ. Microbiol. 78:7798-7800(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: KTR9 EMBL AFR51104.1.
[2]"Complete genome sequence of Gordonia sp. KTR9."
Chen H.-P., Lau A., Davis A.E., Zhu S., Eng S.W.M., Howes C.G., Crocker F.H., Indest K.J., Hallam S.J., Eltis L.D.
Appl. Environ. Microbiol. 0:0-0(2012)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: KTR9 EMBL AFR51104.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002907 Genomic DNA. Translation: AFR51104.1.
RefSeqYP_006671287.1. NC_018581.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFR51104; AFR51104; KTR9_4500.
GeneID13568454.
KEGGgor:KTR9_4500.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameJ9SQC7_9ACTO
AccessionPrimary (citable) accession number: J9SQC7
Entry history
Integrated into UniProtKB/TrEMBL: November 28, 2012
Last sequence update: November 28, 2012
Last modified: April 16, 2014
This is version 9 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)