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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

KTR9_4500

Organism
Gordonia sp. KTR9
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
ORF Names:KTR9_4500Imported
OrganismiGordonia sp. KTR9Imported
Taxonomic identifieri337191 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaCorynebacterialesGordoniaceaeGordonia
ProteomesiUP000003281 Componenti: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

J9SQC7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAGGEILEVD GRRISITNLS KVLYPATGTR KFEVIDYYSR IADVLLPHVR
60 70 80 90 100
NRLITRKRWP NGVESTPFFE KNVPESAPEW IRRHGIQHSE RVISYAMADD
110 120 130 140 150
RATLVWLAQM AVLEIHTPQW RLPMGPDGAP MANRIVFDLD PGPRVPLHRT
160 170 180 190 200
AEVACEIRNW LGGATTYPVT SGGKGIHLYA RLPKPVTSDA ARKVAQEVAN
210 220 230 240 250
EFARQHSDFI TAKMSKSLRD DKVFIDWSQN NAAKTTLAPY SLRGREQPWV
260 270 280 290 300
AAPRTWEEME DPKLSQLLYT EVLDRVDEFG DLLDGLDDPY RDADDGGSEP
310 320 330 340 350
VVEPAAGQVI NLKEYRRKRD QSKTPEPFGD EVYRQRVESE SPSDEPDSTD
360 370 380 390 400
SPTDRAPIFV IQEHHARRLH YDFRLEHDGV LVSWAVPKNL PTDPDQNRLA
410 420 430 440 450
VQTEDHPMDY ADFEGDIPAG EYGGGHVSIW DKGTFELEKW RDKEVIVRLH
460 470 480 490 500
GERVQGRYAL IRTGEKNWLA HLMSDEPRPI VPDSLTDPRP MLATDESIDG
510 520 530 540 550
LNGRDWAFEG KWDGYRLLIR SVGGDFRLTS RSGIDMTADF PELAGLADDL
560 570 580 590 600
GLMDVVLDGE VVAIDSSGRT NFTLLTSRRH TDEPYALRLH LFDILFLNGS
610 620 630 640 650
SLLRKPWSVR RELLEELAPA FRNSAFVEVP PLLPGPGSAA VEYSREHNLE
660 670 680 690 700
GVVAKRRNSV YQQGRRSTTW LKHKNWSDIE VVVGGYRPGR GNRAHTIGSL
710 720 730 740 750
LIGLPEETGL RYVGRVGTGF TDAQLRSLAE ELGPLEISRS PFLDKLDRPV
760 770 780 790
ESSAVWVLPK IVGEVRFMDW TTAGHLRHPS WRGIRRDKLP GDL
Length:793
Mass (Da):89,525
Last modified:November 28, 2012 - v1
Checksum:i749BD71A280A6697
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002907 Genomic DNA. Translation: AFR51104.1.
RefSeqiWP_014928512.1. NC_018581.1.

Genome annotation databases

EnsemblBacteriaiAFR51104; AFR51104; KTR9_4500.
KEGGigor:KTR9_4500.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002907 Genomic DNA. Translation: AFR51104.1.
RefSeqiWP_014928512.1. NC_018581.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAFR51104; AFR51104; KTR9_4500.
KEGGigor:KTR9_4500.

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genomic and transcriptomic studies of an RDX (hexahydro-1,3,5-trinitro-1,3,5-triazine)-degrading actinobacterium."
    Chen H.P., Zhu S.H., Casabon I., Hallam S.J., Crocker F.H., Mohn W.W., Indest K.J., Eltis L.D.
    Appl. Environ. Microbiol. 78:7798-7800(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: KTR9Imported.

Entry informationi

Entry nameiJ9SQC7_9ACTN
AccessioniPrimary (citable) accession number: J9SQC7
Entry historyi
Integrated into UniProtKB/TrEMBL: November 28, 2012
Last sequence update: November 28, 2012
Last modified: July 22, 2015
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.