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J9SQC7

- J9SQC7_9ACTO

UniProt

J9SQC7 - J9SQC7_9ACTO

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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

KTR9_4500

Organism
Gordonia sp. KTR9
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
ORF Names:KTR9_4500Imported
OrganismiGordonia sp. KTR9Imported
Taxonomic identifieri337191 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeGordoniaceaeGordonia
ProteomesiUP000003281: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

J9SQC7 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAGGEILEVD GRRISITNLS KVLYPATGTR KFEVIDYYSR IADVLLPHVR
60 70 80 90 100
NRLITRKRWP NGVESTPFFE KNVPESAPEW IRRHGIQHSE RVISYAMADD
110 120 130 140 150
RATLVWLAQM AVLEIHTPQW RLPMGPDGAP MANRIVFDLD PGPRVPLHRT
160 170 180 190 200
AEVACEIRNW LGGATTYPVT SGGKGIHLYA RLPKPVTSDA ARKVAQEVAN
210 220 230 240 250
EFARQHSDFI TAKMSKSLRD DKVFIDWSQN NAAKTTLAPY SLRGREQPWV
260 270 280 290 300
AAPRTWEEME DPKLSQLLYT EVLDRVDEFG DLLDGLDDPY RDADDGGSEP
310 320 330 340 350
VVEPAAGQVI NLKEYRRKRD QSKTPEPFGD EVYRQRVESE SPSDEPDSTD
360 370 380 390 400
SPTDRAPIFV IQEHHARRLH YDFRLEHDGV LVSWAVPKNL PTDPDQNRLA
410 420 430 440 450
VQTEDHPMDY ADFEGDIPAG EYGGGHVSIW DKGTFELEKW RDKEVIVRLH
460 470 480 490 500
GERVQGRYAL IRTGEKNWLA HLMSDEPRPI VPDSLTDPRP MLATDESIDG
510 520 530 540 550
LNGRDWAFEG KWDGYRLLIR SVGGDFRLTS RSGIDMTADF PELAGLADDL
560 570 580 590 600
GLMDVVLDGE VVAIDSSGRT NFTLLTSRRH TDEPYALRLH LFDILFLNGS
610 620 630 640 650
SLLRKPWSVR RELLEELAPA FRNSAFVEVP PLLPGPGSAA VEYSREHNLE
660 670 680 690 700
GVVAKRRNSV YQQGRRSTTW LKHKNWSDIE VVVGGYRPGR GNRAHTIGSL
710 720 730 740 750
LIGLPEETGL RYVGRVGTGF TDAQLRSLAE ELGPLEISRS PFLDKLDRPV
760 770 780 790
ESSAVWVLPK IVGEVRFMDW TTAGHLRHPS WRGIRRDKLP GDL
Length:793
Mass (Da):89,525
Last modified:November 28, 2012 - v1
Checksum:i749BD71A280A6697
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002907 Genomic DNA. Translation: AFR51104.1.
RefSeqiWP_014928512.1. NC_018581.1.
YP_006671287.1. NC_018581.1.

Genome annotation databases

EnsemblBacteriaiAFR51104; AFR51104; KTR9_4500.
GeneIDi13568454.
KEGGigor:KTR9_4500.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002907 Genomic DNA. Translation: AFR51104.1 .
RefSeqi WP_014928512.1. NC_018581.1.
YP_006671287.1. NC_018581.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AFR51104 ; AFR51104 ; KTR9_4500 .
GeneIDi 13568454.
KEGGi gor:KTR9_4500.

Phylogenomic databases

KOi K01971.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genomic and transcriptomic studies of an RDX (hexahydro-1,3,5-trinitro-1,3,5-triazine)-degrading actinobacterium."
    Chen H.P., Zhu S.H., Casabon I., Hallam S.J., Crocker F.H., Mohn W.W., Indest K.J., Eltis L.D.
    Appl. Environ. Microbiol. 78:7798-7800(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: KTR9Imported.

Entry informationi

Entry nameiJ9SQC7_9ACTO
AccessioniPrimary (citable) accession number: J9SQC7
Entry historyi
Integrated into UniProtKB/TrEMBL: November 28, 2012
Last sequence update: November 28, 2012
Last modified: October 1, 2014
This is version 11 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3