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J9S2M4 (J9S2M4_HUMAN) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 5. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
Name:HLA-B EMBL AFR54425.1
OrganismHomo sapiens (Human) EMBL AFR54425.1
Taxonomic identifier9606 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Protein attributes

Sequence length273 AA.
Sequence statusFragment.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the MHC class I family. RuleBase RU004439

Contains Ig-like C1-type (immunoglobulin-like) domain. SAAS SAAS027648

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 EMBL AFR54425.1
Non-terminal residue2731 EMBL AFR54425.1

Sequences

Sequence LengthMass (Da)Tools
J9S2M4 [UniParc].

Last modified November 28, 2012. Version 1.
Checksum: 0C3A8C276C86828E

FASTA27331,616
        10         20         30         40         50         60 
SHSMRYFYTS VSRPGRGEPR FISVGYVDDT QFVRFDSDAA SPREEPRAPW IEQEGPEYWD 

        70         80         90        100        110        120 
RNTQICKTNT QTDRESLRNL RGYYNQSEAG SHTLQRMYGC DVGPDGRLLR GHNQFAYDGK 

       130        140        150        160        170        180 
DYIALNEDLS SWTAADTAAQ ITQRKWEAAR VAEQLRTYLE GTCVEWLRRY LENGKETLQR 

       190        200        210        220        230        240 
ADPPKTHVTH HPISDHEATL RCWALGFYPA EITLTWQRDG EDQTQDTELV ETRPAGDRTF 

       250        260        270 
QKWAAVVVPS GEEQRYTCHV QHEGLPKPLT LRW 

« Hide

References

[1]"A novel HLA-B allele found in a Taiwanese individual."
Lee Y.-J.
Submitted (JUL-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
JX284120 Genomic DNA. Translation: AFR54425.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

Gene3D2.60.40.10. 1 hit.
3.30.500.10. 1 hit.
InterProIPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR003006. Ig/MHC_CS.
IPR003597. Ig_C1-set.
IPR011161. MHC_I-like_Ag-recog.
IPR011162. MHC_I/II-like_Ag-recog.
IPR027648. MHC_I_a.
IPR001039. MHC_I_a_a1/a2.
[Graphical view]
PfamPF07654. C1-set. 1 hit.
PF00129. MHC_I. 1 hit.
[Graphical view]
PRINTSPR01638. MHCCLASSI.
SMARTSM00407. IGc1. 1 hit.
[Graphical view]
SUPFAMSSF54452. SSF54452. 1 hit.
PROSITEPS50835. IG_LIKE. 1 hit.
PS00290. IG_MHC. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameJ9S2M4_HUMAN
AccessionPrimary (citable) accession number: J9S2M4
Entry history
Integrated into UniProtKB/TrEMBL: November 28, 2012
Last sequence update: November 28, 2012
Last modified: October 16, 2013
This is version 5 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.