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J9RWJ8

- J9RWJ8_9ACTO

UniProt

J9RWJ8 - J9RWJ8_9ACTO

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

KTR9_0350

Organism
Gordonia sp. KTR9
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 10 (01 Oct 2014)
      Sequence version 1 (28 Nov 2012)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported
    Gene namesi
    ORF Names:KTR9_0350Imported
    OrganismiGordonia sp. KTR9Imported
    Taxonomic identifieri337191 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeGordoniaceaeGordonia
    ProteomesiUP000003281: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    J9RWJ8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSFMDLPVMP PVAPMLAKAV TSVPPQPDGS VAWSYEPKWD GFRALIFRDG    50
    DEVSIGSRGG KDLARYFPEI VAAVKEELPE KVVLDGEIGV PALIGDTHRL 100
    DWDSLAQRIH PAESRVTMLA EKTPAIFIGF DALALESTNV MAEPFEVRRE 150
    ALLRAVGPGG RDRRVHVSRV TSDPAVAEDW FSAFEGAGLD GVVAKRLDGV 200
    YVENKREMLK IKHKRTADCV IFGYRIHKSG TGIGSMLLGL YGDDGELRMV 250
    GGAGAFSDAK RIELQQMFEP MRLDPENASP GEPTRWRSEK SGEWIPIRPE 300
    LVAEFAYDQM ENHRFRHTVK FLRWRPDREP RSCGYDQLDV PLTYDLHDVL 350
    EGE 353
    Length:353
    Mass (Da):39,476
    Last modified:November 28, 2012 - v1
    Checksum:iA40588E34C7BC904
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002907 Genomic DNA. Translation: AFR47016.1.
    RefSeqiWP_014925088.1. NC_018581.1.
    YP_006667152.1. NC_018581.1.

    Genome annotation databases

    EnsemblBacteriaiAFR47016; AFR47016; KTR9_0350.
    GeneIDi13568200.
    KEGGigor:KTR9_0350.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002907 Genomic DNA. Translation: AFR47016.1 .
    RefSeqi WP_014925088.1. NC_018581.1.
    YP_006667152.1. NC_018581.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AFR47016 ; AFR47016 ; KTR9_0350 .
    GeneIDi 13568200.
    KEGGi gor:KTR9_0350.

    Phylogenomic databases

    KOi K01971.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genomic and transcriptomic studies of an RDX (hexahydro-1,3,5-trinitro-1,3,5-triazine)-degrading actinobacterium."
      Chen H.P., Zhu S.H., Casabon I., Hallam S.J., Crocker F.H., Mohn W.W., Indest K.J., Eltis L.D.
      Appl. Environ. Microbiol. 78:7798-7800(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: KTR9Imported.

    Entry informationi

    Entry nameiJ9RWJ8_9ACTO
    AccessioniPrimary (citable) accession number: J9RWJ8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 28, 2012
    Last sequence update: November 28, 2012
    Last modified: October 1, 2014
    This is version 10 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3