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J9RWJ8 (J9RWJ8_9ACTO) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 8. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
ORF Names:KTR9_0350 EMBL AFR47016.1
OrganismGordonia sp. KTR9 [Complete proteome] EMBL AFR47016.1
Taxonomic identifier337191 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeGordoniaceaeGordonia

Protein attributes

Sequence length353 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
J9RWJ8 [UniParc].

Last modified November 28, 2012. Version 1.
Checksum: A40588E34C7BC904

FASTA35339,476
        10         20         30         40         50         60 
MSFMDLPVMP PVAPMLAKAV TSVPPQPDGS VAWSYEPKWD GFRALIFRDG DEVSIGSRGG 

        70         80         90        100        110        120 
KDLARYFPEI VAAVKEELPE KVVLDGEIGV PALIGDTHRL DWDSLAQRIH PAESRVTMLA 

       130        140        150        160        170        180 
EKTPAIFIGF DALALESTNV MAEPFEVRRE ALLRAVGPGG RDRRVHVSRV TSDPAVAEDW 

       190        200        210        220        230        240 
FSAFEGAGLD GVVAKRLDGV YVENKREMLK IKHKRTADCV IFGYRIHKSG TGIGSMLLGL 

       250        260        270        280        290        300 
YGDDGELRMV GGAGAFSDAK RIELQQMFEP MRLDPENASP GEPTRWRSEK SGEWIPIRPE 

       310        320        330        340        350 
LVAEFAYDQM ENHRFRHTVK FLRWRPDREP RSCGYDQLDV PLTYDLHDVL EGE 

« Hide

References

[1]"Genomic and transcriptomic studies of an RDX (hexahydro-1,3,5-trinitro-1,3,5-triazine)-degrading actinobacterium."
Chen H.P., Zhu S.H., Casabon I., Hallam S.J., Crocker F.H., Mohn W.W., Indest K.J., Eltis L.D.
Appl. Environ. Microbiol. 78:7798-7800(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: KTR9 EMBL AFR47016.1.
[2]"Complete genome sequence of Gordonia sp. KTR9."
Chen H.-P., Lau A., Davis A.E., Zhu S., Eng S.W.M., Howes C.G., Crocker F.H., Indest K.J., Hallam S.J., Eltis L.D.
Appl. Environ. Microbiol. 0:0-0(2012)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: KTR9 EMBL AFR47016.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002907 Genomic DNA. Translation: AFR47016.1.
RefSeqYP_006667152.1. NC_018581.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFR47016; AFR47016; KTR9_0350.
GeneID13568200.
KEGGgor:KTR9_0350.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameJ9RWJ8_9ACTO
AccessionPrimary (citable) accession number: J9RWJ8
Entry history
Integrated into UniProtKB/TrEMBL: November 28, 2012
Last sequence update: November 28, 2012
Last modified: April 16, 2014
This is version 8 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)