J9R9T1 (J9R9T1_RIEAN) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Monomeric isocitrate dehydrogenase EMBL AFR36472.1

Gene names

ORF Names:

B739_1889 EMBL AFR36472.1

Organism

Riemerella anatipestifer RA-CH-1 EMBL AFR36472.1

Taxonomic identifier

1228997 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Bacteroidetes/Chlorobi group › Bacteroidetes › Flavobacteriia › Flavobacteriales › Flavobacteriaceae › Riemerella › Riemerella anatipestifer

Protein attributes

Sequence length	738 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor

Binds 1 magnesium or manganese ion per subunit By similarity. PIRSR PIRSR009407-3

Ontologies

Keywords
Ligand	Magnesium PIRSR PIRSR009407-3 Metal-binding PIRSR PIRSR009407-3
Gene Ontology (GO)
Biological_process	tricarboxylic acid cycle Inferred from electronic annotation. Source: InterPro
Molecular_function	isocitrate dehydrogenase (NADP+) activity Inferred from electronic annotation. Source: InterPro metal ion binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Regions
	Region	132 – 139	8	Substrate binding By similarity PIRSR PIRSR009407-2
Sites
	Metal binding	348	1	Magnesium or manganese By similarity PIRSR PIRSR009407-3
	Metal binding	546	1	Magnesium or manganese By similarity PIRSR PIRSR009407-3
	Metal binding	550	1	Magnesium or manganese By similarity PIRSR PIRSR009407-3
	Binding site	145	1	Substrate By similarity PIRSR PIRSR009407-2
	Binding site	545	1	Substrate By similarity PIRSR PIRSR009407-2
	Site	255	1	Critical for catalysis By similarity PIRSR PIRSR009407-1
	Site	418	1	Critical for catalysis By similarity PIRSR PIRSR009407-1

Sequences

	Sequence		Length	Mass (Da)
	J9R9T1 [UniParc]. Last modified November 28, 2012. Version 1. Checksum: 5C19A1856AAA51E2	FASTA	738	81,660
	10 20 30 40 50 60 MSTAKIYYTL TDEAPMLATH SFLPIVKAFT KSADIQIEVP DISLSGRILA NFPEVLTEEQ 70 80 90 100 110 120 RILDALTQLG ELATKPEANI IKLPNISASI PQLNEAIEEL QKKGFNVPNY PAEPKTEEEK 130 140 150 160 170 180 EIKAKYAKVL GSAVNPVLRE GNSDRRAPKA VKNYAKANPH RIGEWKSDSK TDVAHMNQGD 190 200 210 220 230 240 FYGTETSTTV EKDGKFKIVF FGNDGSEKVL KDYASLQAGE IIDSSVMNIK ALKTFVKEAI 250 260 270 280 290 300 QEAKSRNVLL SAHLKATMMK VSDPIIFGAI VETFFQEVFE KYAETFKSLD VNPNDGLASL 310 320 330 340 350 360 YDKIAGIAQE ADIKADIERV LNESSRVAMV NSDKGITNFH VPSDVIVDAS MAALVRGGGK 370 380 390 400 410 420 MWNKDGQEED TLAIIPDRSY AGFYQAVIDD MKANGKLDPT TMGSVPNVGL MAKKAEEYGS 430 440 450 460 470 480 HDKTFQMEAE GTVKVLNENN EVLLEQKVEA GDIFRMCQTK DAPIQDWVKL AVNRSRLSDT 490 500 510 520 530 540 PAIFWLDKGR AHDREVIKKV EQYLKNYDTQ GLDIKILDVK DAMSETLKRA REGKDTISVS 550 560 570 580 590 600 GNVLRDYLTD LFPILELGTS AKMLSIVPLM NGGGLFETGA GGSAPKHIEQ FIEEGYLRWD 610 620 630 640 650 660 SLGEFLALQA SLEHLAQTQN NTKAQVLADA LDEANAKFLA NDKSPARKIG SIDNRGSHFY 670 680 690 700 710 720 LALYWAEALA AQTQDSELST LFQPIAKEMQ ENEAKINEEL IASQGKAQDI EGYYRPNEDK 730 TYAAMRPSVT LNQIIDRI

References

[1]	"Riemerella anatipestifer vaccine strains." Chun C.A., Shu W.M., Kang Z.D., Jia W.X. Submitted (SEP-2012) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: RA-CH-1 EMBL AFR36472.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP003787 Genomic DNA. Translation: AFR36472.1.
RefSeq	YP_006724372.1. NC_018609.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AFR36472; AFR36472; B739_1889.
GeneID	13716411.
KEGG	rag:B739_1889.
Phylogenomic databases
KO	K00031.
Family and domain databases
Gene3D	3.40.718.10. 3 hits.
InterPro	IPR004436. Isocitrate_DH_NADP_mono. IPR024084. IsoPropMal-DH-like_dom. [Graphical view]
Pfam	PF03971. IDH. 1 hit. [Graphical view]
PIRSF	PIRSF009407. IDH_monmr. 1 hit.
TIGRFAMs	TIGR00178. monomer_idh. 1 hit.
ProtoNet	Search...

Entry information

Entry name

J9R9T1_RIEAN

Accession

Primary (citable) accession number: J9R9T1

Entry history

Integrated into UniProtKB/TrEMBL:	November 28, 2012
Last sequence update:	November 28, 2012
Last modified:	April 3, 2013
This is version 5 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)