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J9R9T1 (J9R9T1_RIEAN) Unreviewed, UniProtKB/TrEMBL

Last modified January 22, 2014. Version 6. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
ORF Names:B739_1889 EMBL AFR36472.1
OrganismRiemerella anatipestifer RA-CH-1 [Complete proteome] EMBL AFR36472.1
Taxonomic identifier1228997 [NCBI]
Taxonomic lineageBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeRiemerella

Protein attributes

Sequence length738 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Binds 1 magnesium or manganese ion per subunit By similarity. PIRSR PIRSR009407-3

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Region132 – 1398Substrate binding By similarity

Sites

Metal binding3481Magnesium or manganese By similarity PIRSR PIRSR009407-3
Metal binding5461Magnesium or manganese By similarity PIRSR PIRSR009407-3
Metal binding5501Magnesium or manganese By similarity PIRSR PIRSR009407-3
Binding site1451Substrate By similarity
Binding site5451Substrate By similarity
Site2551Critical for catalysis By similarity PIRSR PIRSR009407-1
Site4181Critical for catalysis By similarity PIRSR PIRSR009407-1

Sequences

Sequence LengthMass (Da)Tools
J9R9T1 [UniParc].

Last modified November 28, 2012. Version 1.
Checksum: 5C19A1856AAA51E2

FASTA73881,660
        10         20         30         40         50         60 
MSTAKIYYTL TDEAPMLATH SFLPIVKAFT KSADIQIEVP DISLSGRILA NFPEVLTEEQ 

        70         80         90        100        110        120 
RILDALTQLG ELATKPEANI IKLPNISASI PQLNEAIEEL QKKGFNVPNY PAEPKTEEEK 

       130        140        150        160        170        180 
EIKAKYAKVL GSAVNPVLRE GNSDRRAPKA VKNYAKANPH RIGEWKSDSK TDVAHMNQGD 

       190        200        210        220        230        240 
FYGTETSTTV EKDGKFKIVF FGNDGSEKVL KDYASLQAGE IIDSSVMNIK ALKTFVKEAI 

       250        260        270        280        290        300 
QEAKSRNVLL SAHLKATMMK VSDPIIFGAI VETFFQEVFE KYAETFKSLD VNPNDGLASL 

       310        320        330        340        350        360 
YDKIAGIAQE ADIKADIERV LNESSRVAMV NSDKGITNFH VPSDVIVDAS MAALVRGGGK 

       370        380        390        400        410        420 
MWNKDGQEED TLAIIPDRSY AGFYQAVIDD MKANGKLDPT TMGSVPNVGL MAKKAEEYGS 

       430        440        450        460        470        480 
HDKTFQMEAE GTVKVLNENN EVLLEQKVEA GDIFRMCQTK DAPIQDWVKL AVNRSRLSDT 

       490        500        510        520        530        540 
PAIFWLDKGR AHDREVIKKV EQYLKNYDTQ GLDIKILDVK DAMSETLKRA REGKDTISVS 

       550        560        570        580        590        600 
GNVLRDYLTD LFPILELGTS AKMLSIVPLM NGGGLFETGA GGSAPKHIEQ FIEEGYLRWD 

       610        620        630        640        650        660 
SLGEFLALQA SLEHLAQTQN NTKAQVLADA LDEANAKFLA NDKSPARKIG SIDNRGSHFY 

       670        680        690        700        710        720 
LALYWAEALA AQTQDSELST LFQPIAKEMQ ENEAKINEEL IASQGKAQDI EGYYRPNEDK 

       730 
TYAAMRPSVT LNQIIDRI 

« Hide

References

[1]"Riemerella anatipestifer vaccine strains."
Chun C.A., Shu W.M., Kang Z.D., Jia W.X.
Submitted (SEP-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: RA-CH-1 EMBL AFR36472.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP003787 Genomic DNA. Translation: AFR36472.1.
RefSeqYP_006724372.1. NC_018609.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFR36472; AFR36472; B739_1889.
GeneID13716411.
KEGGrag:B739_1889.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK00031.

Family and domain databases

Gene3D3.40.718.10. 3 hits.
InterProIPR004436. Isocitrate_DH_NADP_mono.
IPR024084. IsoPropMal-DH-like_dom.
[Graphical view]
PfamPF03971. IDH. 1 hit.
[Graphical view]
PIRSFPIRSF009407. IDH_monmr. 1 hit.
TIGRFAMsTIGR00178. monomer_idh. 1 hit.
ProtoNetSearch...

Entry information

Entry nameJ9R9T1_RIEAN
AccessionPrimary (citable) accession number: J9R9T1
Entry history
Integrated into UniProtKB/TrEMBL: November 28, 2012
Last sequence update: November 28, 2012
Last modified: January 22, 2014
This is version 6 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)