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J9PBD3

- J9PBD3_CANFA

UniProt

J9PBD3 - J9PBD3_CANFA

Protein
Submitted name:

Uncharacterized protein

Gene

RPL10L

Organism
Canis familiaris (Dog) (Canis lupus familiaris)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 15 (01 Oct 2014)
      Sequence version 1 (31 Oct 2012)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. spermatogenesis Source: Ensembl
    2. translation Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Uncharacterized proteinImported
    Gene namesi
    Name:RPL10LImported
    OrganismiCanis familiaris (Dog) (Canis lupus familiaris)Imported
    Taxonomic identifieri9615 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCarnivoraCaniformiaCanidaeCanis
    ProteomesiUP000002254: Chromosome 8

    Subcellular locationi

    GO - Cellular componenti

    1. nucleus Source: Ensembl
    2. ribosome Source: InterPro

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    2ZKRelectron microscopy8.70h1-214[»]
    ProteinModelPortaliJ9PBD3.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00390000003897.
    KOiK02866.
    OMAiIRCKDSN.
    OrthoDBiEOG76MK97.
    TreeFamiTF300082.

    Family and domain databases

    Gene3Di3.90.1170.10. 1 hit.
    InterProiIPR001197. Ribosomal_L10e.
    IPR016180. Ribosomal_L10e/L16.
    IPR018255. Ribosomal_L10e_CS.
    [Graphical view]
    PfamiPF00252. Ribosomal_L16. 1 hit.
    [Graphical view]
    PIRSFiPIRSF005590. Ribosomal_L10. 1 hit.
    SUPFAMiSSF54686. SSF54686. 1 hit.
    TIGRFAMsiTIGR00279. L10e. 1 hit.
    PROSITEiPS01257. RIBOSOMAL_L10E. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    J9PBD3-1 [UniParc]FASTAAdd to Basket

    « Hide

    MGRRPARCYR YCKNKPYPKS RFCRGVPDAK IRIFDLGRKK AKVDEFPLCG    50
    HMVSDEYEQL SSEALEAARI CANKYMVKSC GKDGFHIRVR LHPFHVIRIN 100
    KMLSCAGADR LQTGMRGAFG KPQGTVARVH IGQVIMSVRT KLQNKEHVIE 150
    ALRRAKFKFP GRQKIHISKK WGFTKFNANE FEDKVAKKRL IPDGCGVKYV 200
    PSRGSLDTWR ALHS 214
    Length:214
    Mass (Da):24,507
    Last modified:October 31, 2012 - v1
    Checksum:iAD7FD1CC7D433BB5
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AAEX03005710 Genomic DNA. No translation available.
    RefSeqiXP_547794.3. XM_547794.4.

    Genome annotation databases

    EnsembliENSCAFT00000022457; ENSCAFP00000043112; ENSCAFG00000014147.
    GeneIDi490672.
    KEGGicfa:490672.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AAEX03005710 Genomic DNA. No translation available.
    RefSeqi XP_547794.3. XM_547794.4.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    2ZKR electron microscopy 8.70 h 1-214 [» ]
    ProteinModelPortali J9PBD3.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSCAFT00000022457 ; ENSCAFP00000043112 ; ENSCAFG00000014147 .
    GeneIDi 490672.
    KEGGi cfa:490672.

    Phylogenomic databases

    GeneTreei ENSGT00390000003897.
    KOi K02866.
    OMAi IRCKDSN.
    OrthoDBi EOG76MK97.
    TreeFami TF300082.

    Family and domain databases

    Gene3Di 3.90.1170.10. 1 hit.
    InterProi IPR001197. Ribosomal_L10e.
    IPR016180. Ribosomal_L10e/L16.
    IPR018255. Ribosomal_L10e_CS.
    [Graphical view ]
    Pfami PF00252. Ribosomal_L16. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF005590. Ribosomal_L10. 1 hit.
    SUPFAMi SSF54686. SSF54686. 1 hit.
    TIGRFAMsi TIGR00279. L10e. 1 hit.
    PROSITEi PS01257. RIBOSOMAL_L10E. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence, comparative analysis and haplotype structure of the domestic dog."
      Broad Sequencing Platform
      Lindblad-Toh K., Wade C.M., Mikkelsen T.S., Karlsson E.K., Jaffe D.B., Kamal M., Clamp M., Chang J.L., Kulbokas E.J. III, Zody M.C., Mauceli E., Xie X., Breen M., Wayne R.K., Ostrander E.A., Ponting C.P., Galibert F., Smith D.R.
      , deJong P.J., Kirkness E.F., Alvarez P., Biagi T., Brockman W., Butler J., Chin C.-W., Cook A., Cuff J., Daly M.J., DeCaprio D., Gnerre S., Grabherr M., Kellis M., Kleber M., Bardeleben C., Goodstadt L., Heger A., Hitte C., Kim L., Koepfli K.-P., Parker H.G., Pollinger J.P., Searle S.M.J., Sutter N.B., Thomas R., Webber C., Baldwin J., Abebe A., Abouelleil A., Aftuck L., Ait-Zahra M., Aldredge T., Allen N., An P., Anderson S., Antoine C., Arachchi H., Aslam A., Ayotte L., Bachantsang P., Barry A., Bayul T., Benamara M., Berlin A., Bessette D., Blitshteyn B., Bloom T., Blye J., Boguslavskiy L., Bonnet C., Boukhgalter B., Brown A., Cahill P., Calixte N., Camarata J., Cheshatsang Y., Chu J., Citroen M., Collymore A., Cooke P., Dawoe T., Daza R., Decktor K., DeGray S., Dhargay N., Dooley K., Dooley K., Dorje P., Dorjee K., Dorris L., Duffey N., Dupes A., Egbiremolen O., Elong R., Falk J., Farina A., Faro S., Ferguson D., Ferreira P., Fisher S., FitzGerald M., Foley K., Foley C., Franke A., Friedrich D., Gage D., Garber M., Gearin G., Giannoukos G., Goode T., Goyette A., Graham J., Grandbois E., Gyaltsen K., Hafez N., Hagopian D., Hagos B., Hall J., Healy C., Hegarty R., Honan T., Horn A., Houde N., Hughes L., Hunnicutt L., Husby M., Jester B., Jones C., Kamat A., Kanga B., Kells C., Khazanovich D., Kieu A.C., Kisner P., Kumar M., Lance K., Landers T., Lara M., Lee W., Leger J.-P., Lennon N., Leuper L., LeVine S., Liu J., Liu X., Lokyitsang Y., Lokyitsang T., Lui A., Macdonald J., Major J., Marabella R., Maru K., Matthews C., McDonough S., Mehta T., Meldrim J., Melnikov A., Meneus L., Mihalev A., Mihova T., Miller K., Mittelman R., Mlenga V., Mulrain L., Munson G., Navidi A., Naylor J., Nguyen T., Nguyen N., Nguyen C., Nguyen T., Nicol R., Norbu N., Norbu C., Novod N., Nyima T., Olandt P., O'Neill B., O'Neill K., Osman S., Oyono L., Patti C., Perrin D., Phunkhang P., Pierre F., Priest M., Rachupka A., Raghuraman S., Rameau R., Ray V., Raymond C., Rege F., Rise C., Rogers J., Rogov P., Sahalie J., Settipalli S., Sharpe T., Shea T., Sheehan M., Sherpa N., Shi J., Shih D., Sloan J., Smith C., Sparrow T., Stalker J., Stange-Thomann N., Stavropoulos S., Stone C., Stone S., Sykes S., Tchuinga P., Tenzing P., Tesfaye S., Thoulutsang D., Thoulutsang Y., Topham K., Topping I., Tsamla T., Vassiliev H., Venkataraman V., Vo A., Wangchuk T., Wangdi T., Weiand M., Wilkinson J., Wilson A., Yadav S., Yang S., Yang X., Young G., Yu Q., Zainoun J., Zembek L., Zimmer A., Lander E.S.
      Nature 438:803-819(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BoxerImported.
    2. Cited for: STRUCTURE BY ELECTRON MICROSCOPY (8.70 ANGSTROMS).
    3. Ensembl
      Submitted (SEP-2012) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: BoxerImported.

    Entry informationi

    Entry nameiJ9PBD3_CANFA
    AccessioniPrimary (citable) accession number: J9PBD3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 31, 2012
    Last sequence update: October 31, 2012
    Last modified: October 1, 2014
    This is version 15 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3