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J9NZS7

- J9NZS7_CANFA

UniProt

J9NZS7 - J9NZS7_CANFA

Protein
Submitted name:

Uncharacterized protein

Gene

LOC102155427

Organism
Canis familiaris (Dog) (Canis lupus familiaris)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
  1. Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Uncharacterized proteinImported
    Gene namesi
    Name:LOC102155427Imported
    Synonyms:RPL39Imported, RPL39LImported
    OrganismiCanis familiaris (Dog) (Canis lupus familiaris)Imported
    Taxonomic identifieri9615 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCarnivoraCaniformiaCanidaeCanis
    ProteomesiUP000002254: Chromosome 8

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: InterPro

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    2ZKRelectron microscopy8.7031-51[»]
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00390000014814.
    KOiK02924.
    OMAiWIRMRTN.
    OrthoDBiEOG789CF5.
    TreeFamiTF300223.

    Family and domain databases

    Gene3Di1.10.1620.10. 1 hit.
    HAMAPiMF_00629. Ribosomal_L39e.
    InterProiIPR000077. Ribosomal_L39.
    IPR020083. Ribosomal_L39_CS.
    IPR023626. Ribosomal_L39e_dom.
    [Graphical view]
    PANTHERiPTHR19970. PTHR19970. 1 hit.
    PfamiPF00832. Ribosomal_L39. 1 hit.
    [Graphical view]
    SUPFAMiSSF48662. SSF48662. 1 hit.
    PROSITEiPS00051. RIBOSOMAL_L39E. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    J9NZS7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSSHKTFRIK RFLAKKQKQN RPIPQWIRMK TGNKIRYNSK RRHWRRTKLG   50
    L 51
    Length:51
    Mass (Da):6,407
    Last modified:October 31, 2012 - v1
    Checksum:i2023CA8590C7752C
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AAEX03003500 Genomic DNA. No translation available.
    AAEX03005652 Genomic DNA. No translation available.
    AAEX03007502 Genomic DNA. No translation available.
    AAEX03016414 Genomic DNA. No translation available.
    AAEX03017475 Genomic DNA. No translation available.
    RefSeqiXP_003434034.1. XM_003433986.2.
    XP_005619861.1. XM_005619804.1.
    XP_005623370.1. XM_005623313.1.
    XP_005626145.1. XM_005626088.1.
    XP_005640037.1. XM_005639980.1.
    XP_005641800.1. XM_005641743.1.

    Genome annotation databases

    EnsembliENSCAFT00000046102; ENSCAFP00000036947; ENSCAFG00000032101.
    ENSCAFT00000047239; ENSCAFP00000037062; ENSCAFG00000031092.
    ENSCAFT00000047528; ENSCAFP00000038797; ENSCAFG00000032122.
    ENSCAFT00000047637; ENSCAFP00000040955; ENSCAFG00000029014.
    ENSCAFT00000047989; ENSCAFP00000038711; ENSCAFG00000029524.
    GeneIDi100682542.
    100685611.
    100685924.
    100686103.
    100687285.
    100687749.
    KEGGicfa:100682542.
    cfa:100685611.
    cfa:100685924.
    cfa:100686103.
    cfa:100687285.
    cfa:100687749.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AAEX03003500 Genomic DNA. No translation available.
    AAEX03005652 Genomic DNA. No translation available.
    AAEX03007502 Genomic DNA. No translation available.
    AAEX03016414 Genomic DNA. No translation available.
    AAEX03017475 Genomic DNA. No translation available.
    RefSeqi XP_003434034.1. XM_003433986.2.
    XP_005619861.1. XM_005619804.1.
    XP_005623370.1. XM_005623313.1.
    XP_005626145.1. XM_005626088.1.
    XP_005640037.1. XM_005639980.1.
    XP_005641800.1. XM_005641743.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    2ZKR electron microscopy 8.70 3 1-51 [» ]
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSCAFT00000046102 ; ENSCAFP00000036947 ; ENSCAFG00000032101 .
    ENSCAFT00000047239 ; ENSCAFP00000037062 ; ENSCAFG00000031092 .
    ENSCAFT00000047528 ; ENSCAFP00000038797 ; ENSCAFG00000032122 .
    ENSCAFT00000047637 ; ENSCAFP00000040955 ; ENSCAFG00000029014 .
    ENSCAFT00000047989 ; ENSCAFP00000038711 ; ENSCAFG00000029524 .
    GeneIDi 100682542.
    100685611.
    100685924.
    100686103.
    100687285.
    100687749.
    KEGGi cfa:100682542.
    cfa:100685611.
    cfa:100685924.
    cfa:100686103.
    cfa:100687285.
    cfa:100687749.

    Organism-specific databases

    CTDi 6170.

    Phylogenomic databases

    GeneTreei ENSGT00390000014814.
    KOi K02924.
    OMAi WIRMRTN.
    OrthoDBi EOG789CF5.
    TreeFami TF300223.

    Family and domain databases

    Gene3Di 1.10.1620.10. 1 hit.
    HAMAPi MF_00629. Ribosomal_L39e.
    InterProi IPR000077. Ribosomal_L39.
    IPR020083. Ribosomal_L39_CS.
    IPR023626. Ribosomal_L39e_dom.
    [Graphical view ]
    PANTHERi PTHR19970. PTHR19970. 1 hit.
    Pfami PF00832. Ribosomal_L39. 1 hit.
    [Graphical view ]
    SUPFAMi SSF48662. SSF48662. 1 hit.
    PROSITEi PS00051. RIBOSOMAL_L39E. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence, comparative analysis and haplotype structure of the domestic dog."
      Broad Sequencing Platform
      Lindblad-Toh K., Wade C.M., Mikkelsen T.S., Karlsson E.K., Jaffe D.B., Kamal M., Clamp M., Chang J.L., Kulbokas E.J. III, Zody M.C., Mauceli E., Xie X., Breen M., Wayne R.K., Ostrander E.A., Ponting C.P., Galibert F., Smith D.R.
      , deJong P.J., Kirkness E.F., Alvarez P., Biagi T., Brockman W., Butler J., Chin C.-W., Cook A., Cuff J., Daly M.J., DeCaprio D., Gnerre S., Grabherr M., Kellis M., Kleber M., Bardeleben C., Goodstadt L., Heger A., Hitte C., Kim L., Koepfli K.-P., Parker H.G., Pollinger J.P., Searle S.M.J., Sutter N.B., Thomas R., Webber C., Baldwin J., Abebe A., Abouelleil A., Aftuck L., Ait-Zahra M., Aldredge T., Allen N., An P., Anderson S., Antoine C., Arachchi H., Aslam A., Ayotte L., Bachantsang P., Barry A., Bayul T., Benamara M., Berlin A., Bessette D., Blitshteyn B., Bloom T., Blye J., Boguslavskiy L., Bonnet C., Boukhgalter B., Brown A., Cahill P., Calixte N., Camarata J., Cheshatsang Y., Chu J., Citroen M., Collymore A., Cooke P., Dawoe T., Daza R., Decktor K., DeGray S., Dhargay N., Dooley K., Dooley K., Dorje P., Dorjee K., Dorris L., Duffey N., Dupes A., Egbiremolen O., Elong R., Falk J., Farina A., Faro S., Ferguson D., Ferreira P., Fisher S., FitzGerald M., Foley K., Foley C., Franke A., Friedrich D., Gage D., Garber M., Gearin G., Giannoukos G., Goode T., Goyette A., Graham J., Grandbois E., Gyaltsen K., Hafez N., Hagopian D., Hagos B., Hall J., Healy C., Hegarty R., Honan T., Horn A., Houde N., Hughes L., Hunnicutt L., Husby M., Jester B., Jones C., Kamat A., Kanga B., Kells C., Khazanovich D., Kieu A.C., Kisner P., Kumar M., Lance K., Landers T., Lara M., Lee W., Leger J.-P., Lennon N., Leuper L., LeVine S., Liu J., Liu X., Lokyitsang Y., Lokyitsang T., Lui A., Macdonald J., Major J., Marabella R., Maru K., Matthews C., McDonough S., Mehta T., Meldrim J., Melnikov A., Meneus L., Mihalev A., Mihova T., Miller K., Mittelman R., Mlenga V., Mulrain L., Munson G., Navidi A., Naylor J., Nguyen T., Nguyen N., Nguyen C., Nguyen T., Nicol R., Norbu N., Norbu C., Novod N., Nyima T., Olandt P., O'Neill B., O'Neill K., Osman S., Oyono L., Patti C., Perrin D., Phunkhang P., Pierre F., Priest M., Rachupka A., Raghuraman S., Rameau R., Ray V., Raymond C., Rege F., Rise C., Rogers J., Rogov P., Sahalie J., Settipalli S., Sharpe T., Shea T., Sheehan M., Sherpa N., Shi J., Shih D., Sloan J., Smith C., Sparrow T., Stalker J., Stange-Thomann N., Stavropoulos S., Stone C., Stone S., Sykes S., Tchuinga P., Tenzing P., Tesfaye S., Thoulutsang D., Thoulutsang Y., Topham K., Topping I., Tsamla T., Vassiliev H., Venkataraman V., Vo A., Wangchuk T., Wangdi T., Weiand M., Wilkinson J., Wilson A., Yadav S., Yang S., Yang X., Young G., Yu Q., Zainoun J., Zembek L., Zimmer A., Lander E.S.
      Nature 438:803-819(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BoxerImported.
    2. Cited for: STRUCTURE BY ELECTRON MICROSCOPY (8.70 ANGSTROMS).
    3. Ensembl
      Submitted (SEP-2012) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: BoxerImported.

    Entry informationi

    Entry nameiJ9NZS7_CANFA
    AccessioniPrimary (citable) accession number: J9NZS7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 31, 2012
    Last sequence update: October 31, 2012
    Last modified: October 1, 2014
    This is version 18 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3