Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

J9JUI3

- J9JUI3_ACYPI

UniProt

J9JUI3 - J9JUI3_ACYPI

Protein

DNA ligase

Gene

LOC100167798

Organism
Acyrthosiphon pisum (Pea aphid)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 12 (01 Oct 2014)
      Sequence version 1 (31 Oct 2012)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    Catalytic activityi

    ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC
    4. zinc ion binding Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: UniProtKB-KW
    3. DNA replication Source: UniProtKB-KW

    Keywords - Molecular functioni

    LigaseUniRule annotation

    Keywords - Biological processi

    DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotation, Nucleotide-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
    Gene namesi
    Name:LOC100167798Imported
    OrganismiAcyrthosiphon pisum (Pea aphid)Imported
    Taxonomic identifieri7029 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraParaneopteraHemipteraSternorrhynchaAphidiformesAphidoideaAphididaeMacrosiphiniAcyrthosiphon
    ProteomesiUP000007819: Unplaced

    Family & Domainsi

    Sequence similaritiesi

    Phylogenomic databases

    KOiK10776.
    OMAiLFSEMKH.
    OrthoDBiEOG7BKCT2.

    Family and domain databases

    Gene3Di1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    3.30.1740.10. 1 hit.
    3.40.50.10190. 1 hit.
    InterProiIPR001357. BRCT_dom.
    IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    IPR001510. Znf_PARP.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    PF00645. zf-PARP. 1 hit.
    [Graphical view]
    SMARTiSM00292. BRCT. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    SSF52113. SSF52113. 1 hit.
    TIGRFAMsiTIGR00574. dnl1. 1 hit.
    PROSITEiPS50172. BRCT. 1 hit.
    PS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    PS50064. PARP_ZN_FINGER_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    J9JUI3-1 [UniParc]FASTAAdd to Basket

    « Hide

    MEEPSEDKLF VAEKSKSNRA KCKKCKEVLN QGALRIAKVV ANPFGDGKMM    50
    AWHHPQCLVT VFSKQRASTA KITCVDDIGG WDGLSMEHQN EILMTFPDIP 100
    KEKLKTHDDE EPGKKDTPNK KKPKAKPVPS SPPTQDYYFK DFRKLCLSLS 150
    QENSHLQKTA IFKEFIDKIL SKEHSNETRA ESMFLWCKML LPNSEKRIYN 200
    LQSKQLIKLY SQLFKQNVNL MLEDLEKGDV AETIRIFFEK SNNVDVKPAS 250
    KSTLTLAKVN SFLDKLSIET TEVAQTALFK SIAKLCTGND LKMIIRLVMH 300
    DLRINCGPKF ILGALHSDAY EAYQTSHDLK SVVQNACSCD SSKIASNGKM 350
    NIKLSLLTPI LPMLAEPCKN LDDFFKKCPN GIYSEIKYDG ERVQLHKSET 400
    QFKFFSRSLK PVLGHKVDLF KQYIPKAFQH GKEIILDCEV LMYDHKTNKP 450
    LPFGTLGIHK KSKFEDANPC LFVFDCMYYN GVSLLDRTIV ERRKILMQNM 500
    TPIKGHIMFS EVKELHNTKE LKLMVEHVLK QGLEGLVLKD LTGVYEPGKR 550
    HWQKIKKDYL FDGSMADSAD LVVLGAWFGT GNKGGMMSIF LMGCYNEAKK 600
    KWCTVTKVHG GHDDKTLERL QGELKMIKIS KDPEKVPEWL KCTKTMIPDF 650
    VAEDPKKMPV WEISGAEFSQ AEVHTANGIS IRFPRVTKIR NDKDWKTATS 700
    LTELQNLYEA SKETNNLSIF SNLSPEKNTS SDNDLQSSPE KRNKIKRTLE 750
    TAVTESSPLK MNTEIPVKRA KLSDERRRRL PDLFTGIRVV VPDSISKNTF 800
    LRYFIAYGGT PLNSSNELAP THVIVQKKEH NRSSEKPMKE EKKEKKKSLN 850
    ATAVCAQWFW DSIRKGTQLP TENYQ 875
    Length:875
    Mass (Da):99,796
    Last modified:October 31, 2012 - v1
    Checksum:i01790AEF2A7E521F
    GO

    Sequence databases

    RefSeqiXP_001943689.1. XM_001943654.3.

    Genome annotation databases

    EnsemblMetazoaiACYPI004007-RA; ACYPI004007-PA; ACYPI004007.
    GeneIDi100162887.
    KEGGiapi:100162887.

    Cross-referencesi

    Sequence databases

    RefSeqi XP_001943689.1. XM_001943654.3.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblMetazoai ACYPI004007-RA ; ACYPI004007-PA ; ACYPI004007 .
    GeneIDi 100162887.
    KEGGi api:100162887.

    Phylogenomic databases

    KOi K10776.
    OMAi LFSEMKH.
    OrthoDBi EOG7BKCT2.

    Family and domain databases

    Gene3Di 1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    3.30.1740.10. 1 hit.
    3.40.50.10190. 1 hit.
    InterProi IPR001357. BRCT_dom.
    IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    IPR001510. Znf_PARP.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    PF00645. zf-PARP. 1 hit.
    [Graphical view ]
    SMARTi SM00292. BRCT. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    SSF52113. SSF52113. 1 hit.
    TIGRFAMsi TIGR00574. dnl1. 1 hit.
    PROSITEi PS50172. BRCT. 1 hit.
    PS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    PS50064. PARP_ZN_FINGER_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Jiang H., Abraham K., Ali S., Alsbrooks S.L., Anim B.N., Anosike U.S., Attaway T., Bandaranaike D.P., Battles P.K., Bell S.N., Bell A.V., Beltran B., Bickham C., Bustamante Y., Caleb T., Canada A., Cardenas V., Carter K.
      , Chacko J., Chandrabose M.N., Chavez D., Chavez A., Chen L., Chu H.-S., Claassen K.J., Cockrell R., Collins M., Cooper J.A., Cree A., Curry S.M., Da Y., Dao M.D., Das B., Davila M.-L., Davy-Carroll L., Denson S., Dinh H., Ebong V.E., Edwards J.R., Egan A., El-Daye J., Escobedo L., Fernandez S., Fernando P.R., Flagg N., Forbes L.D., Fowler R.G., Fu Q., Gabisi R.A., Ganer J., Garbino Pronczuk A., Garcia R.M., Garner T., Garrett T.E., Gonzalez D.A., Hamid H., Hawkins E.S., Hirani K., Hogues M.E., Hollins B., Hsiao C.-H., Jabil R., James M.L., Jhangiani S.N., Johnson B., Johnson Q., Joshi V., Kalu J.B., Kam C., Kashfia A., Keebler J., Kisamo H., Kovar C.L., Lago L.A., Lai C.-Y., Laidlaw J., Lara F., Le T.-K., Lee S.L., Legall F.H., Lemon S.J., Lewis L.R., Li B., Liu Y., Liu Y.-S., Lopez J., Lozado R.J., Lu J., Madu R.C., Maheshwari M., Maheshwari R., Malloy K., Martinez E., Mathew T., Mercado I.C., Mercado C., Meyer B., Montgomery K., Morgan M.B., Munidasa M., Nazareth L.V., Nelson J., Ng B.M., Nguyen N.B., Nguyen P.Q., Nguyen T., Obregon M., Okwuonu G.O., Onwere C.G., Orozco G., Parra A., Patel S., Patil S., Perez A., Perez Y., Pham C., Primus E.L., Pu L.-L., Puazo M., Qin X., Quiroz J.B., Reese J., Richards S., Rives C.M., Robberts R., Ruiz S.J., Ruiz M.J., Santibanez J., Schneider B.W., Sisson I., Smith M., Sodergren E., Song X.-Z., Song B.B., Summersgill H., Thelus R., Thornton R.D., Trejos Z.Y., Usmani K., Vattathil S., Villasana D., Walker D.L., Wang S., Wang K., White C.S., Williams A.C., Williamson J., Wilson K., Woghiren I.O., Woodworth J.R., Worley K.C., Wright R.A., Wu W., Young L., Zhang L., Zhang J., Zhu Y., Muzny D.M., Weinstock G., Gibbs R.A.
      Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    2. EnsemblMetazoa
      Submitted (MAR-2014) to UniProtKB
      Cited for: IDENTIFICATION.

    Entry informationi

    Entry nameiJ9JUI3_ACYPI
    AccessioniPrimary (citable) accession number: J9JUI3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 31, 2012
    Last sequence update: October 31, 2012
    Last modified: October 1, 2014
    This is version 12 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3