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J9JUI3 (J9JUI3_ACYPI) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 8. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length875 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m). RuleBase RU000617

Sequence similarities

Belongs to the ATP-dependent DNA ligase family.

Sequences

Sequence LengthMass (Da)Tools
J9JUI3 [UniParc].

Last modified October 31, 2012. Version 1.
Checksum: 01790AEF2A7E521F

FASTA87599,796
        10         20         30         40         50         60 
MEEPSEDKLF VAEKSKSNRA KCKKCKEVLN QGALRIAKVV ANPFGDGKMM AWHHPQCLVT 

        70         80         90        100        110        120 
VFSKQRASTA KITCVDDIGG WDGLSMEHQN EILMTFPDIP KEKLKTHDDE EPGKKDTPNK 

       130        140        150        160        170        180 
KKPKAKPVPS SPPTQDYYFK DFRKLCLSLS QENSHLQKTA IFKEFIDKIL SKEHSNETRA 

       190        200        210        220        230        240 
ESMFLWCKML LPNSEKRIYN LQSKQLIKLY SQLFKQNVNL MLEDLEKGDV AETIRIFFEK 

       250        260        270        280        290        300 
SNNVDVKPAS KSTLTLAKVN SFLDKLSIET TEVAQTALFK SIAKLCTGND LKMIIRLVMH 

       310        320        330        340        350        360 
DLRINCGPKF ILGALHSDAY EAYQTSHDLK SVVQNACSCD SSKIASNGKM NIKLSLLTPI 

       370        380        390        400        410        420 
LPMLAEPCKN LDDFFKKCPN GIYSEIKYDG ERVQLHKSET QFKFFSRSLK PVLGHKVDLF 

       430        440        450        460        470        480 
KQYIPKAFQH GKEIILDCEV LMYDHKTNKP LPFGTLGIHK KSKFEDANPC LFVFDCMYYN 

       490        500        510        520        530        540 
GVSLLDRTIV ERRKILMQNM TPIKGHIMFS EVKELHNTKE LKLMVEHVLK QGLEGLVLKD 

       550        560        570        580        590        600 
LTGVYEPGKR HWQKIKKDYL FDGSMADSAD LVVLGAWFGT GNKGGMMSIF LMGCYNEAKK 

       610        620        630        640        650        660 
KWCTVTKVHG GHDDKTLERL QGELKMIKIS KDPEKVPEWL KCTKTMIPDF VAEDPKKMPV 

       670        680        690        700        710        720 
WEISGAEFSQ AEVHTANGIS IRFPRVTKIR NDKDWKTATS LTELQNLYEA SKETNNLSIF 

       730        740        750        760        770        780 
SNLSPEKNTS SDNDLQSSPE KRNKIKRTLE TAVTESSPLK MNTEIPVKRA KLSDERRRRL 

       790        800        810        820        830        840 
PDLFTGIRVV VPDSISKNTF LRYFIAYGGT PLNSSNELAP THVIVQKKEH NRSSEKPMKE 

       850        860        870 
EKKEKKKSLN ATAVCAQWFW DSIRKGTQLP TENYQ 

« Hide

References

« Hide 'large scale' references
[1]Jiang H., Abraham K., Ali S., Alsbrooks S.L., Anim B.N., Anosike U.S., Attaway T., Bandaranaike D.P., Battles P.K., Bell S.N., Bell A.V., Beltran B., Bickham C., Bustamante Y., Caleb T., Canada A., Cardenas V., Carter K. expand/collapse author list , Chacko J., Chandrabose M.N., Chavez D., Chavez A., Chen L., Chu H.-S., Claassen K.J., Cockrell R., Collins M., Cooper J.A., Cree A., Curry S.M., Da Y., Dao M.D., Das B., Davila M.-L., Davy-Carroll L., Denson S., Dinh H., Ebong V.E., Edwards J.R., Egan A., El-Daye J., Escobedo L., Fernandez S., Fernando P.R., Flagg N., Forbes L.D., Fowler R.G., Fu Q., Gabisi R.A., Ganer J., Garbino Pronczuk A., Garcia R.M., Garner T., Garrett T.E., Gonzalez D.A., Hamid H., Hawkins E.S., Hirani K., Hogues M.E., Hollins B., Hsiao C.-H., Jabil R., James M.L., Jhangiani S.N., Johnson B., Johnson Q., Joshi V., Kalu J.B., Kam C., Kashfia A., Keebler J., Kisamo H., Kovar C.L., Lago L.A., Lai C.-Y., Laidlaw J., Lara F., Le T.-K., Lee S.L., Legall F.H., Lemon S.J., Lewis L.R., Li B., Liu Y., Liu Y.-S., Lopez J., Lozado R.J., Lu J., Madu R.C., Maheshwari M., Maheshwari R., Malloy K., Martinez E., Mathew T., Mercado I.C., Mercado C., Meyer B., Montgomery K., Morgan M.B., Munidasa M., Nazareth L.V., Nelson J., Ng B.M., Nguyen N.B., Nguyen P.Q., Nguyen T., Obregon M., Okwuonu G.O., Onwere C.G., Orozco G., Parra A., Patel S., Patil S., Perez A., Perez Y., Pham C., Primus E.L., Pu L.-L., Puazo M., Qin X., Quiroz J.B., Reese J., Richards S., Rives C.M., Robberts R., Ruiz S.J., Ruiz M.J., Santibanez J., Schneider B.W., Sisson I., Smith M., Sodergren E., Song X.-Z., Song B.B., Summersgill H., Thelus R., Thornton R.D., Trejos Z.Y., Usmani K., Vattathil S., Villasana D., Walker D.L., Wang S., Wang K., White C.S., Williams A.C., Williamson J., Wilson K., Woghiren I.O., Woodworth J.R., Worley K.C., Wright R.A., Wu W., Young L., Zhang L., Zhang J., Zhu Y., Muzny D.M., Weinstock G., Gibbs R.A.
Submitted (JUN-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[2]EnsemblMetazoa
Submitted (AUG-2013) to UniProtKB
Cited for: IDENTIFICATION.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AK342216 Genomic DNA. No translation available.
RefSeqXP_001943689.1. XM_001943654.2.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaACYPI004007-RA; ACYPI004007-PA; ACYPI004007.
GeneID100162887.
KEGGapi:100162887.

Phylogenomic databases

KOK10776.
OMALFSEMKH.
OrthoDBEOG7BKCT2.
PhylomeDBJ9JUI3.

Family and domain databases

Gene3D1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
3.30.1740.10. 1 hit.
3.40.50.10190. 1 hit.
InterProIPR001357. BRCT_dom.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
IPR001510. Znf_PARP.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
PF00645. zf-PARP. 1 hit.
[Graphical view]
SMARTSM00292. BRCT. 1 hit.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 1 hit.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS50172. BRCT. 1 hit.
PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
PS50064. PARP_ZN_FINGER_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameJ9JUI3_ACYPI
AccessionPrimary (citable) accession number: J9JUI3
Entry history
Integrated into UniProtKB/TrEMBL: October 31, 2012
Last sequence update: October 31, 2012
Last modified: November 13, 2013
This is version 8 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)