J7RDP4 (J7RDP4_BORP1) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Alanine racemase RuleBase RU000608
EC=5.1.1.1 RuleBase RU000608

Gene names

Name:	dadX EMBL CCJ62612.1
Ordered Locus Names:	BN118_1187 EMBL CCJ62612.1

Organism

Bordetella pertussis (strain ATCC 9797 / DSM 5571 / NCTC 10739 / 18323) [Complete proteome] [HAMAP] EMBL CCJ62612.1

Taxonomic identifier

568706 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Alcaligenaceae › Bordetella › Bordetella pertussis

Protein attributes

Sequence length	375 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	L-alanine = D-alanine. RuleBase RU000608 SAAS SAAS020622
Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000608 SAAS SAAS020622
Pathway	Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. SAAS SAAS020622
Sequence similarities	Belongs to the alanine racemase family. RuleBase RU004188

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU000608 SAAS SAAS020622
Molecular function	Isomerase RuleBase RU000608 SAAS SAAS020622 EMBL CCJ62612.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	D-alanine biosynthetic process Inferred from electronic annotation. Source: UniProtKB-UniPathway
Molecular_function	alanine racemase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	J7RDP4 [UniParc]. Last modified October 31, 2012. Version 1. Checksum: E8E1C911407F0012	FASTA	375	39,562
	10 20 30 40 50 60 MPRPIFASIS QSALRHNLAT VRRHLDDVAA KADGTPPSIW AVIKANAYGH GIEQAVAGFS 70 80 90 100 110 120 AAQGLAMLDL QEAVRCREAG WGGPILLLEG FFQPSDLEIV DRYHLATTVH TREQFDMLAH 130 140 150 160 170 180 ARLSRRVDIM VKLNSGMNRL GFAPDAYGSA YARAQQLHEY GVVGGIGKMT HFACADGPQG 190 200 210 220 230 240 VTQQMNVFNG ATAHLAGATS VCNSAATLRY ADLAVGHDGQ THWVRPGICL YGASPFADAQ 250 260 270 280 290 300 AGAFGLIPAM TLRSELIAIQ DIPAGAAVGY GAIFRADRPM RIGVVACGYA DGYPRHAGTG 310 320 330 340 350 360 MPLTVGGVRT RLVGRVSMDM LMVDLDPVPA AGIGTPVVLW GEDGPSVDEV AEAAGTIGYE 370 LLCALAPRVP VRHEG

References

[1]

"Comparative genomics of the classical Bordetella subspecies: the evolution and exchange of virulence-associated diversity amongst closely related pathogens." Park J., Zhang Y., Buboltz A.M., Zhang X., Schuster S.C., Ahuja U., Liu M., Miller J.F., Sebaihia M., Bentley S.D., Parkhill J., Harvill E.T. BMC Genomics 13:545-545(2012) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 9797 / DSM 5571 / NCTC 10739 / 18323.

Cross-references

Sequence databases
EMBL GenBank DDBJ	HE965805 Genomic DNA. Translation: CCJ62612.1.
RefSeq	YP_006625864.1. NC_018518.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CCJ62612; CCJ62612; BN118_1187.
GeneID	13801477.
KEGG	bper:BN118_1187.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01775.
Enzyme and pathway databases
UniPathway	UPA00042; UER00497.
Family and domain databases
Gene3D	2.40.37.10. 1 hit.
HAMAP	MF_01201. Ala_racemase.
InterPro	IPR000821. Ala_racemase. IPR009006. Ala_racemase/Decarboxylase_C. IPR011079. Ala_racemase_C. IPR001608. Ala_racemase_N. IPR020622. Ala_racemase_pyridoxalP-BS. [Graphical view]
Pfam	PF00842. Ala_racemase_C. 1 hit. PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PRINTS	PR00992. ALARACEMASE.
SMART	SM01005. Ala_racemase_C. 1 hit. [Graphical view]
SUPFAM	SSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMs	TIGR00492. alr. 1 hit.
PROSITE	PS00395. ALANINE_RACEMASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

J7RDP4_BORP1

Accession

Primary (citable) accession number: J7RDP4

Entry history

Integrated into UniProtKB/TrEMBL:	October 31, 2012
Last sequence update:	October 31, 2012
Last modified:	April 3, 2013
This is version 6 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)