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Protein

ATP-dependent RNA helicase RhlE

Gene

rhlE

Organism
Escherichia coli
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

DEAD-box RNA helicase involved in ribosome assembly. Has RNA-dependent ATPase activity and unwinds double-stranded RNA.UniRule annotation

Catalytic activityi

ATP + H2O = ADP + phosphate.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionHelicaseUniRule annotationImported, Hydrolase
Biological processRibosome biogenesisUniRule annotation
LigandATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
ATP-dependent RNA helicase RhlEUniRule annotation (EC:3.6.4.13UniRule annotation)
Gene namesi
Name:rhlEUniRule annotationImported
ORF Names:A9R57_22115Imported, AC789_1c08310Imported, ACN002_0829Imported, ACU57_05775Imported, AM266_20870Imported, AUQ13_15340Imported, AW120_15700Imported, B1K96_12305Imported, BE957_20740Imported, BHS81_04860Imported, BHS87_04235Imported, BJJ90_17895Imported, BMT91_14960Imported, BN17_05961Imported, BUE81_13710Imported, BW690_02975Imported, CA593_25135Imported, EC3234A_13c00160Imported, EL75_2997Imported, EL79_3087Imported, EL80_3048Imported, ERS085365_01677Imported, ERS085374_03879Imported, ERS085416_03983Imported, ERS139211_03961Imported, ERS139235_01836Imported, ERS150873_00286Imported, PGD_02537Imported, RG28_00545Imported, SK85_00799Imported, WQ89_21215Imported
OrganismiEscherichia coliImported
Taxonomic identifieri562 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000044893 Componenti: Unassembled WGS sequence
  • UP000194303 Componenti: Unassembled WGS sequence
  • UP000193530 Componenti: Unassembled WGS sequence
  • UP000044381 Componenti: Unassembled WGS sequence
  • UP000030018 Componenti: Unassembled WGS sequence
  • UP000030000 Componenti: Unassembled WGS sequence
  • UP000066343 Componenti: Chromosome
  • UP000038112 Componenti: Unassembled WGS sequence
  • UP000188724 Componenti: Unassembled WGS sequence
  • UP000070045 Componenti: Unassembled WGS sequence
  • UP000184379 Componenti: Chromosome
  • UP000094022 Componenti: Unassembled WGS sequence
  • UP000194285 Componenti: Unassembled WGS sequence
  • UP000042305 Componenti: Unassembled WGS sequence
  • UP000193168 Componenti: Unassembled WGS sequence
  • UP000040934 Componenti: Unassembled WGS sequence
  • UP000185422 Componenti: Chromosome
  • UP000036012 Componenti: Unassembled WGS sequence
  • UP000189671 Componenti: Chromosome
  • UP000051850 Componenti: Unassembled WGS sequence
  • UP000186204 Componenti: Unassembled WGS sequence
  • UP000050556 Componenti: Unassembled WGS sequence
  • UP000188855 Componenti: Unassembled WGS sequence
  • UP000031522 Componenti: Chromosome
  • UP000029988 Componenti: Unassembled WGS sequence
  • UP000095183 Componenti: Unassembled WGS sequence
  • UP000077380 Componenti: Unassembled WGS sequence
  • UP000194199 Componenti: Chromosome
  • UP000041959 Componenti: Unassembled WGS sequence
  • UP000036812 Componenti: Unassembled WGS sequence

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

CytoplasmUniRule annotation

Interactioni

Protein-protein interaction databases

STRINGi469008.ECD_00764.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 29Q_MOTIFInterPro annotationAdd BLAST29
Domaini32 – 208Helicase ATP-bindingInterPro annotationAdd BLAST177
Domaini219 – 381Helicase C-terminalInterPro annotationAdd BLAST163

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi1 – 29Q motifPROSITE-ProRule annotationAdd BLAST29

Sequence similaritiesi

Belongs to the DEAD box helicase family. RhlE subfamily.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105C1J. Bacteria.
COG0513. LUCA.

Family and domain databases

HAMAPiMF_00968. DEAD_helicase_RhlE. 1 hit.
InterProiView protein in InterPro
IPR011545. DEAD/DEAH_box_helicase_dom.
IPR028622. DEAD_helicase_RhlE.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
IPR000629. RNA-helicase_DEAD-box_CS.
IPR014014. RNA_helicase_DEAD_Q_motif.
PfamiView protein in Pfam
PF00270. DEAD. 1 hit.
PF00271. Helicase_C. 1 hit.
SMARTiView protein in SMART
SM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
SUPFAMiSSF52540. SSF52540. 1 hit.
PROSITEiView protein in PROSITE
PS00039. DEAD_ATP_HELICASE. 1 hit.
PS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
PS51195. Q_MOTIF. 1 hit.

Sequencei

Sequence statusi: Complete.

J7QYZ2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSFDSLGLSP DILRAVAEQG YREPTPIQQQ AIPAVLEGRD LMASAQTGTG
60 70 80 90 100
KTAGFTLPLL QHLITRQPHA KGRRPVRALI LTPTRELAAQ IGENVRDYSK
110 120 130 140 150
YLNIRSLVVF GGVSINPQMM KLRGGVDVLV ATPGRLLDLE HQNAVKLDQV
160 170 180 190 200
EILVLDEADR MLDMGFIHDI RRVLTKLPAK RQNLLFSATF SDDIKALAEK
210 220 230 240 250
LLHNPLEIEV ARRNTASDQV TQHVHFVDKK RKRELLSHMI GKGNWQQVLV
260 270 280 290 300
FTRTKHGANH LAEQLNKDGI RSAAIHGNKS QGARTRALAD FKSGDIRVLV
310 320 330 340 350
ATDIAARGLD IEELPHVVNY ELPNVPEDYV HRIGRTGRAA ATGEALSLVC
360 370 380 390 400
VDEHKLLRDI EKLLKKEIPR IAIPGYEPDP SIKAEPIQNG RQQRGGGGRG
410 420 430 440 450
QGGGRGQQQP RRGEGGAKSA SAKPAEKPSR RLGDAKPAGE QQRRRRPRKP

AAAQ
Length:454
Mass (Da):49,989
Last modified:October 31, 2012 - v1
Checksum:i7576B35B7901671F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP010315 Genomic DNA. Translation: AJE55103.1.
CP007491 Genomic DNA. Translation: ALY12287.1.
CP010122 Genomic DNA. Translation: APJ74878.1.
CP017631 Genomic DNA. Translation: APT03747.1.
CP018948 Genomic DNA. Translation: AQV21402.1.
CP021175 Genomic DNA. Translation: ARR36097.1.
HE964769 Genomic DNA. Translation: CCJ43277.1.
HG976952 Genomic DNA. Translation: CDU39451.1.
CXZU01000030 Genomic DNA. Translation: CTS22940.1.
CYAQ01000011 Genomic DNA. Translation: CTS42307.1.
CYCX01000040 Genomic DNA. Translation: CTW66179.1.
CYDH01000051 Genomic DNA. Translation: CTW69726.1.
CYEC01000006 Genomic DNA. Translation: CTX30705.1.
CYFX01000001 Genomic DNA. Translation: CTY93382.1.
JPKH01000044 Genomic DNA. Translation: KGM68226.1.
JPKL01000104 Genomic DNA. Translation: KGM78127.1.
JPMZ01000049 Genomic DNA. Translation: KGM80477.1.
LEUM01000005 Genomic DNA. Translation: KLY03055.1.
LGZP01000047 Genomic DNA. Translation: KNF76384.1.
LDYI01000046 Genomic DNA. Translation: KPO15962.1.
LIVE01000045 Genomic DNA. Translation: KQJ12801.1.
LOOZ01000022 Genomic DNA. Translation: KXR89854.1.
LCVH01000013 Genomic DNA. Translation: OAC44871.1.
LZEH01000285 Genomic DNA. Translation: OEI57264.1.
MSEK01000090 Genomic DNA. Translation: OLR86796.1.
MTKH01000016 Genomic DNA. Translation: ONG31570.1.
MPAF01000026 Genomic DNA. Translation: OOK27032.1.
NAHY01000128 Genomic DNA. Translation: ORJ77903.1.
NAFT01000024 Genomic DNA. Translation: ORT07610.1.
NEON01000018 Genomic DNA. Translation: OTE67423.1.
NBCM01000015 Genomic DNA. Translation: OTE92868.1.
RefSeqiWP_000007101.1. NZ_NEFS01000028.1.

Genome annotation databases

EnsemblBacteriaiAJE55103; AJE55103; AC789_1c08310.
ALY12287; ALY12287; ACN002_0829.
ALZ69093; ALZ69093; AWH59_24425.
ANM81537; ANM81537; A8V37_03080.
AOT33632; AOT33632; FORC31_3175.
CDU39451; CDU39451; PGD_02537.
CTS22940; CTS22940; ERS085374_03879.
CTS42307; CTS42307; ERS085365_01677.
CTW66179; CTW66179; ERS085416_03983.
CTW69726; CTW69726; ERS139211_03961.
CTX30705; CTX30705; ERS139235_01836.
CTY84431; CTY84431; ERS139269_03727.
CTY93382; CTY93382; ERS150873_00286.
KGM68226; KGM68226; EL75_2997.
KGM78127; KGM78127; EL80_3048.
KGM80477; KGM80477; EL79_3087.
KIG79099; KIG79099; PU38_19055.
KIQ48076; KIQ48076; IY32_01980.
KLG78941; KLG78941; WR12_06340.
KLY03055; KLY03055; SK85_00799.
KNF76384; KNF76384; WQ89_21215.
KPO15962; KPO15962; ACU57_05775.
KQJ12801; KQJ12801; AM266_20870.
KXQ42027; KXQ42027; AUQ01_04185.
OAC44871; OAC44871; EC3234A_13c00160.
OCO54646; OCO54646; AN669_0214430.
ODA89040; ODA89040; A9D65_00725.
ODH32637; ODH32637; A6803_04120.
OEI57264; OEI57264; A9R57_22115.
PATRICifig|562.10472.peg.428.

Similar proteinsi

Entry informationi

Entry nameiJ7QYZ2_ECOLX
AccessioniPrimary (citable) accession number: J7QYZ2
Entry historyiIntegrated into UniProtKB/TrEMBL: October 31, 2012
Last sequence update: October 31, 2012
Last modified: August 30, 2017
This is version 50 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported