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J7LZT1 (J7LZT1_9MICC) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 6. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
DNA ligase Lig EMBL AFR30881.1
EC=6.5.1.1 EMBL AFR30881.1
Gene names
Name:lig EMBL AFR30881.1
ORF Names:ARUE_c40090 EMBL AFR30881.1
OrganismArthrobacter sp. Rue61a EMBL AFR30881.1
Taxonomic identifier1118963 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Micrococcaceae › Arthrobacter

Protein attributes

Sequence length354 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AFR30881.1
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
J7LZT1 [UniParc].

Last modified October 31, 2012. Version 1.
Checksum: 132ABF825F5D0EA2

FASTA35440,210
        10         20         30         40         50         60 
MDLPVMPPVS PMLAKSVPTI PDVGHYEPKW DGFRTIVFKD GDEIVLGSRN EKPMTRYFPE 

        70         80         90        100        110        120 
VVEALRKNLP DKCVIDGEIV LIEGKRLEFE VLQQRIHPAD SRVRMLAEKT PASMIAFDIL 

       130        140        150        160        170        180 
ALGDENLMDK PFSERRAILE RTLAKADPPV YVTPAVTDLE RAQEWFVQLE GAGLDGVLSK 

       190        200        210        220        230        240 
PLDGAYQPNK RVMFKTKHER TADCVVAGFR WHKTAKVVGS MLLGLHDDTG RLHHVGVVAS 

       250        260        270        280        290        300 
FPMARREALV AELEPYQVEL SEHPWGEWAN QDETAGGSRM PGAQSRWSGG KDFSFVPLRP 

       310        320        330        340        350 
ELVIEVKYDY MEGDRFRHTT QFRRWRPDRT PESCTYSQLE EPADYDLGEI LRLP

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References

[1]"Complete genome sequence and metabolic potential of the quinaldine-degrading bacterium Arthrobacter sp. Rue61a."
Niewerth H., Schuldes J., Parschat K., Kiefer P., Vorholt J.A., Daniel R., Fetzner S.
BMC Genomics 13:534-534(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Rue61a EMBL AFR30881.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP003203 Genomic DNA. Translation: AFR30881.1.
RefSeqYP_006663919.1. NC_018531.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFR30881; AFR30881; ARUE_c40090.
GeneID13562485.
KEGGarr:ARUE_c40090.

Phylogenomic databases

KOK01971.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameJ7LZT1_9MICC
AccessionPrimary (citable) accession number: J7LZT1
Entry history
Integrated into UniProtKB/TrEMBL: October 31, 2012
Last sequence update: October 31, 2012
Last modified: April 3, 2013
This is version 6 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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