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Protein
Submitted name:

DNA polymerase LigD, polymerase domain protein

Gene

ligD

Organism
Nocardiopsis alba (strain ATCC BAA-2165 / BE74)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, polymerase domain proteinImported
Gene namesi
Name:ligDImported
Ordered Locus Names:B005_3125Imported
OrganismiNocardiopsis alba (strain ATCC BAA-2165 / BE74)Imported
Taxonomic identifieri1205910 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesStreptosporangineaeNocardiopsaceaeNocardiopsis
ProteomesiUP000003779: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiDIQRNAY.

Family and domain databases

InterProiIPR014145. LigD_pol.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.

Sequencei

Sequence statusi: Complete.

J7LBG3-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MRTTVRAGRR KVEIRHADKP LFGEDGATKE DLADYYARIA PLMLPLVKGR
60 70 80 90 100
PVVLERFPEG LDGSGFLVQH PSHPRWIRTV WTSSGRMMEC QEAAALVWCA
110 120 130 140 150
DQAAITLHTW SSRTPRLGLP DRMVLDLDPV GSGREAFAGC REAARVVREV
160 170 180 190 200
LSELGLAAYV MTTGSRGLHV HSPLRPEVDD MEVRRLAKAV ADRVAARAPE
210 220 230 240 250
EWTTRVRKAA RHGRMFVDYL RNGPGQLAVA PYAVRARPGA PVATPITWEE
260 270 280 290 300
LERISSSQEF SIDLERDECP FAGMRRHARS PRRALYLLDR GKGGVVPKPR

AGHV
Length:304
Mass (Da):33,863
Last modified:October 31, 2012 - v1
Checksum:i6FFEC76D24E6109C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003788 Genomic DNA. Translation: AFR08139.1.
RefSeqiWP_014910598.1. NC_018524.1.
YP_006642203.1. NC_018524.1.

Genome annotation databases

EnsemblBacteriaiAFR08139; AFR08139; B005_3125.
GeneIDi13544443.
KEGGinal:B005_3125.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003788 Genomic DNA. Translation: AFR08139.1.
RefSeqiWP_014910598.1. NC_018524.1.
YP_006642203.1. NC_018524.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAFR08139; AFR08139; B005_3125.
GeneIDi13544443.
KEGGinal:B005_3125.

Phylogenomic databases

KOiK01971.
OMAiDIQRNAY.

Family and domain databases

InterProiIPR014145. LigD_pol.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Whole-genome sequence of Nocardiopsis alba strain ATCC BAA-2165 associated with honeybees."
    Qiao J., Chen L., Li Y., Wang J., Zhang W., Chen S.
    Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-2165 / BE74Imported.

Entry informationi

Entry nameiJ7LBG3_NOCAA
AccessioniPrimary (citable) accession number: J7LBG3
Entry historyi
Integrated into UniProtKB/TrEMBL: October 31, 2012
Last sequence update: October 31, 2012
Last modified: February 4, 2015
This is version 9 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.