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Protein
Submitted name:

4-aminobutyrate aminotransferase

Gene

PCC21_023110

Organism
Pectobacterium carotovorum subsp. carotovorum PCC21
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

AminotransferaseImported, Transferase

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
4-aminobutyrate aminotransferaseImported
Gene namesi
ORF Names:PCC21_023110Imported
OrganismiPectobacterium carotovorum subsp. carotovorum PCC21Imported
Taxonomic identifieri1218933 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaePectobacterium
ProteomesiUP000003783 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliJ7KYZ1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.UniRule annotation

Phylogenomic databases

KOiK00823.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR004632. 4NH2But_aminotransferase_bac.
IPR005814. Aminotrans_3.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PANTHERiPTHR11986. PTHR11986. 1 hit.
PfamiPF00202. Aminotran_3. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR00700. GABAtrnsam. 1 hit.
PROSITEiPS00600. AA_TRANSFER_CLASS_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

J7KYZ1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKNSELNQRR LAATPRGVGV MCDFYAERAE NSTLWDVEGR EFIDFAAGIA
60 70 80 90 100
VLNTGHRHPK IVAAVREQLD RFTHTAYQIV PYGSYVTLAE RINALAPIEG
110 120 130 140 150
AAKTTFFTTG AEAVENAVKI ARAYTKRPGV IAFNAAFHGR TLLTMTLTGK
160 170 180 190 200
VAPYSTGFGP FPGSIFHALY PNEKQGISVE QALESVERLM HTDIAADQVA
210 220 230 240 250
AIILEPVQGE GGFHVAPPAF ISGLRKLCDE HGILLIADEV QTGFARTGKL
260 270 280 290 300
FAMEYYAEKA DLITMAKSLG GGFPISGVVG RADVMDAPSP GGLGGTYAGN
310 320 330 340 350
PLSVASALAV LDVIEEEKLC QRAQRLGAAL VETLEKIKAQ CPALVAIRAQ
360 370 380 390 400
GSMVAAEFND PQTGKPSAEI TRQFQKSALE AGLLLLTCGV HGNVIRFLYP
410 420
LTVPDDQFSK AMSILTRVLT R
Length:421
Mass (Da):45,151
Last modified:October 31, 2012 - v1
Checksum:i012AB03C57BB7C28
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003776 Genomic DNA. Translation: AFR03714.1.
RefSeqiWP_014915577.1. NC_018525.1.
YP_006646967.1. NC_018525.1.

Genome annotation databases

EnsemblBacteriaiAFR03714; AFR03714; PCC21_023110.
KEGGipcc:PCC21_023110.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003776 Genomic DNA. Translation: AFR03714.1.
RefSeqiWP_014915577.1. NC_018525.1.
YP_006646967.1. NC_018525.1.

3D structure databases

ProteinModelPortaliJ7KYZ1.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAFR03714; AFR03714; PCC21_023110.
KEGGipcc:PCC21_023110.

Phylogenomic databases

KOiK00823.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR004632. 4NH2But_aminotransferase_bac.
IPR005814. Aminotrans_3.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PANTHERiPTHR11986. PTHR11986. 1 hit.
PfamiPF00202. Aminotran_3. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR00700. GABAtrnsam. 1 hit.
PROSITEiPS00600. AA_TRANSFER_CLASS_3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome Sequence of Pectobacterium carotovorum subsp. carotovorum Strain PCC21, a Pathogen Causing Soft Rot in Chinese Cabbage."
    Park T.H., Choi B.S., Choi A.Y., Choi I.Y., Heu S., Park B.S.
    J. Bacteriol. 194:6345-6346(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PCC21Imported.

Entry informationi

Entry nameiJ7KYZ1_PECCC
AccessioniPrimary (citable) accession number: J7KYZ1
Entry historyi
Integrated into UniProtKB/TrEMBL: October 31, 2012
Last sequence update: October 31, 2012
Last modified: April 29, 2015
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.