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J7IX44 (J7IX44_DESMD) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 13. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length395 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids By similarity. HAMAP-Rule MF_01201

Catalytic activity

L-alanine = D-alanine. HAMAP-Rule MF_01201 RuleBase RU004247 SAAS SAAS020622

Cofactor

Pyridoxal phosphate By similarity. HAMAP-Rule MF_01201 SAAS SAAS020622

Pathway

Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. HAMAP-Rule MF_01201 RuleBase RU004247

Sequence similarities

Belongs to the alanine racemase family. HAMAP-Rule MF_01201 RuleBase RU004188

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site351Proton acceptor; specific for D-alanine By similarity HAMAP-Rule MF_01201
Active site2621Proton acceptor; specific for L-alanine By similarity HAMAP-Rule MF_01201
Binding site1331Substrate By similarity HAMAP-Rule MF_01201
Binding site3351Substrate; via amide nitrogen By similarity HAMAP-Rule MF_01201

Amino acid modifications

Modified residue351N6-(pyridoxal phosphate)lysine By similarity HAMAP-Rule MF_01201

Sequences

Sequence LengthMass (Da)Tools
J7IX44 [UniParc].

Last modified October 31, 2012. Version 1.
Checksum: 6E6F39B81342A875

FASTA39543,927
        10         20         30         40         50         60 
MSGTWIEVDL DAIVNNYQEI IKRLHPKARC MAVVKADAYG LGAVQVALAL EQAGCEAFAV 

        70         80         90        100        110        120 
TKVEEGLILR KSGIKGLILV LGPTTQEEWP EAIKSQLQLT ITELSLIPKL NEVCLGLHQD 

       130        140        150        160        170        180 
VHVQLKLETG MGRTGFRSAE LGELSKLLGN ADRLKVRGVY THFARAAQRD KRYTSEQYAT 

       190        200        210        220        230        240 
FKALITRLEE LGIDPEWKHV CNSAAYLDYP EWHLDFVRIG TLLIGHYPGP GFSGKLSLED 

       250        260        270        280        290        300 
PWIAKSRIVH LRQVPKGTYV GYQSIYRTKS VTQLAVIPVG YADGLGVAPH FVPQGWVDFI 

       310        320        330        340        350        360 
KIVIKNFAAL IGIFLGQERV ELGGRTVRVA GKIGMQLTVL DVGMQDCTLG DEVRIPLRRT 

       370        380        390 
LANPRIHRKY KQGGRILSER TIEEGLSTTN TEYSR 

« Hide

References

[1]"Finished genome of Desulfosporosinus meridiei DSM 13257."
Huntemann M., Wei C.-L., Han J., Detter J.C., Han C., Davenport K., Daligault H., Erkkila T., Gu W., Munk A.C.C., Teshima H., Xu Y., Chain P., Tapia R., Chen A., Krypides N., Mavromatis K., Markowitz V. expand/collapse author list , Szeto E., Ivanova N., Mikhailova N., Ovchinnikova G., Pagani I., Pati A., Goodwin L., Peters L., Pitluck S., Woyke T., Pester M., Spring S., Ollivier B., Rattei T., Klenk H.-P., Wagner M., Loy A.
Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC BAA-275 / DSM 13257 / NCIMB 13706 / S10.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP003629 Genomic DNA. Translation: AFQ46387.1.
RefSeqYP_006624258.1. NC_018515.1.

3D structure databases

ProteinModelPortalJ7IX44.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFQ46387; AFQ46387; Desmer_4583.
GeneID13516138.
KEGGdmi:Desmer_4583.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01775.

Enzyme and pathway databases

UniPathwayUPA00042; UER00497.

Family and domain databases

Gene3D2.40.37.10. 1 hit.
3.20.20.10. 1 hit.
HAMAPMF_01201. Ala_racemase.
InterProIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
IPR029066. PLP-binding_barrel.
[Graphical view]
PfamPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PRINTSPR00992. ALARACEMASE.
SMARTSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMSSF50621. SSF50621. 2 hits.
SSF51419. SSF51419. 1 hit.
TIGRFAMsTIGR00492. alr. 1 hit.
PROSITEPS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameJ7IX44_DESMD
AccessionPrimary (citable) accession number: J7IX44
Entry history
Integrated into UniProtKB/TrEMBL: October 31, 2012
Last sequence update: October 31, 2012
Last modified: July 9, 2014
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)