J7IX44 (J7IX44_DESMD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Alanine racemase RuleBase RU000608
EC=5.1.1.1 RuleBase RU000608

Gene names

Ordered Locus Names:

Desmer_4583 EMBL AFQ46387.1

Organism

Desulfosporosinus meridiei (strain ATCC BAA-275 / DSM 13257 / NCIMB 13706 / S10) [Complete proteome] [HAMAP] EMBL AFQ46387.1

Taxonomic identifier

768704 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Clostridia › Clostridiales › Peptococcaceae › Desulfosporosinus › Desulfosporosinus meridiei

Protein attributes

Sequence length	395 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	L-alanine = D-alanine. RuleBase RU000608 SAAS SAAS020622
Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000608 SAAS SAAS020622
Pathway	Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. RuleBase RU004247 SAAS SAAS020622
Sequence similarities	Belongs to the alanine racemase family. RuleBase RU004188

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU000608 SAAS SAAS020622
Molecular function	Isomerase RuleBase RU000608 SAAS SAAS020622
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	D-alanine biosynthetic process Inferred from electronic annotation. Source: UniProtKB-UniPathway
Molecular_function	alanine racemase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	J7IX44 [UniParc]. Last modified October 31, 2012. Version 1. Checksum: 6E6F39B81342A875	FASTA	395	43,927
	10 20 30 40 50 60 MSGTWIEVDL DAIVNNYQEI IKRLHPKARC MAVVKADAYG LGAVQVALAL EQAGCEAFAV 70 80 90 100 110 120 TKVEEGLILR KSGIKGLILV LGPTTQEEWP EAIKSQLQLT ITELSLIPKL NEVCLGLHQD 130 140 150 160 170 180 VHVQLKLETG MGRTGFRSAE LGELSKLLGN ADRLKVRGVY THFARAAQRD KRYTSEQYAT 190 200 210 220 230 240 FKALITRLEE LGIDPEWKHV CNSAAYLDYP EWHLDFVRIG TLLIGHYPGP GFSGKLSLED 250 260 270 280 290 300 PWIAKSRIVH LRQVPKGTYV GYQSIYRTKS VTQLAVIPVG YADGLGVAPH FVPQGWVDFI 310 320 330 340 350 360 KIVIKNFAAL IGIFLGQERV ELGGRTVRVA GKIGMQLTVL DVGMQDCTLG DEVRIPLRRT 370 380 390 LANPRIHRKY KQGGRILSER TIEEGLSTTN TEYSR

References

[1]

"Finished genome of Desulfosporosinus meridiei DSM 13257." Huntemann M., Wei C.-L., Han J., Detter J.C., Han C., Davenport K., Daligault H., Erkkila T., Gu W., Munk A.C.C., Teshima H., Xu Y., Chain P., Tapia R., Chen A., Krypides N., Mavromatis K., Markowitz V. , Szeto E., Ivanova N., Mikhailova N., Ovchinnikova G., Pagani I., Pati A., Goodwin L., Peters L., Pitluck S., Woyke T., Pester M., Spring S., Ollivier B., Rattei T., Klenk H.-P., Wagner M., Loy A. Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-275 / DSM 13257 / NCIMB 13706 / S10.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP003629 Genomic DNA. Translation: AFQ46387.1.
RefSeq	YP_006624258.1. NC_018515.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AFQ46387; AFQ46387; Desmer_4583.
GeneID	13516138.
KEGG	dmi:Desmer_4583.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01775.
Enzyme and pathway databases
UniPathway	UPA00042; UER00497.
Family and domain databases
Gene3D	2.40.37.10. 1 hit.
HAMAP	MF_01201. Ala_racemase.
InterPro	IPR000821. Ala_racemase. IPR009006. Ala_racemase/Decarboxylase_C. IPR011079. Ala_racemase_C. IPR001608. Ala_racemase_N. IPR020622. Ala_racemase_pyridoxalP-BS. [Graphical view]
Pfam	PF00842. Ala_racemase_C. 1 hit. PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PRINTS	PR00992. ALARACEMASE.
SMART	SM01005. Ala_racemase_C. 1 hit. [Graphical view]
SUPFAM	SSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMs	TIGR00492. alr. 1 hit.
PROSITE	PS00395. ALANINE_RACEMASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

J7IX44_DESMD

Accession

Primary (citable) accession number: J7IX44

Entry history

Integrated into UniProtKB/TrEMBL:	October 31, 2012
Last sequence update:	October 31, 2012
Last modified:	April 3, 2013
This is version 6 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)