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J3TF36 (J3TF36_9ENTR) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 12. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length409 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Cell wall formation By similarity. HAMAP-Rule MF_00047 SAAS SAAS011095

Catalytic activity

ATP + 2 D-alanine = ADP + phosphate + D-alanyl-D-alanine. HAMAP-Rule MF_00047 SAAS SAAS011095

Cofactor

Binds 2 magnesium or manganese ions per subunit By similarity. HAMAP-Rule MF_00047 SAAS SAAS011095

Pathway

Cell wall biogenesis; peptidoglycan biosynthesis. HAMAP-Rule MF_00047 SAAS SAAS011095

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00047 SAAS SAAS011095.

Sequence similarities

Belongs to the D-alanine--D-alanine ligase family. HAMAP-Rule MF_00047

Contains 1 ATP-grasp domain. HAMAP-Rule MF_00047

Contains ATP-grasp domain. SAAS SAAS011095

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Domain194 – 397204ATP-grasp By similarity HAMAP-Rule MF_00047
Nucleotide binding224 – 27956ATP By similarity HAMAP-Rule MF_00047

Sites

Metal binding3511Magnesium or manganese 1 By similarity HAMAP-Rule MF_00047
Metal binding3641Magnesium or manganese 1 By similarity HAMAP-Rule MF_00047
Metal binding3641Magnesium or manganese 2 By similarity HAMAP-Rule MF_00047
Metal binding3661Magnesium or manganese 2 By similarity HAMAP-Rule MF_00047

Sequences

Sequence LengthMass (Da)Tools
J3TF36 [UniParc].

Last modified October 31, 2012. Version 1.
Checksum: 7B77E97E25AE4F1A

FASTA40944,782
        10         20         30         40         50         60 
MNAYHIFVSF KYTLTVLGSD KILRMYIPRT GAYAISIPLI NETVMQQKER RKLRVAVLFG 

        70         80         90        100        110        120 
GQSAEHEVSL RSSINVIRAI NRKKYDLTLI GVDKYGRWTL CREKDYLINP ENPATICLSP 

       130        140        150        160        170        180 
AQSYLGVVPG QQHPQLINAA NGQALPFIDV AFSVLHGTYG EDGSVQGLLR VLSIPYVGAD 

       190        200        210        220        230        240 
VLGSAVCMDK DMTKRVLRDA GVPVTPSVTL FRQGGAIRNF DAIVSQLGLP IFIKPANQGS 

       250        260        270        280        290        300 
SVGVSRVNNR TAFDEAIALA FYYDAKILVE QAIIGREIET AVLGNDSPEV SVCGEICSND 

       310        320        330        340        350        360 
AFYTYNIKYF KSDQPGLIIP APLTASVDAA IRKTARQAYL ALSCSIMARV DFFLTDQGEI 

       370        380        390        400 
LLNEVNTLPG FTSLSMYPKL WAASGLDYCA LVDRLLTLAL SRAHEARLG 

« Hide

References

[1]"Genome Reduction and Co-evolution between the Primary and Secondary Bacterial Symbionts of Psyllids."
Sloan D.B., Moran N.A.
Mol. Biol. Evol. 29:3781-3792(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP003546 Genomic DNA. Translation: AFP84652.1.
RefSeqYP_006588080.1. NC_018419.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFP84652; AFP84652; A359_02510.
GeneID13437688.
KEGGsect:A359_02510.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01921.

Enzyme and pathway databases

UniPathwayUPA00219.

Family and domain databases

Gene3D3.30.1490.20. 1 hit.
3.30.470.20. 1 hit.
3.40.50.20. 1 hit.
HAMAPMF_00047. Dala_Dala_lig.
InterProIPR011761. ATP-grasp.
IPR013815. ATP_grasp_subdomain_1.
IPR013816. ATP_grasp_subdomain_2.
IPR000291. D-Ala_lig_Van_CS.
IPR005905. D_ala_D_ala.
IPR011095. Dala_Dala_lig_C.
IPR011127. Dala_Dala_lig_N.
IPR016185. PreATP-grasp_dom.
[Graphical view]
PANTHERPTHR23132. PTHR23132. 1 hit.
PfamPF07478. Dala_Dala_lig_C. 1 hit.
PF01820. Dala_Dala_lig_N. 1 hit.
[Graphical view]
SUPFAMSSF52440. SSF52440. 1 hit.
TIGRFAMsTIGR01205. D_ala_D_alaTIGR. 1 hit.
PROSITEPS50975. ATP_GRASP. 1 hit.
PS00843. DALA_DALA_LIGASE_1. 1 hit.
PS00844. DALA_DALA_LIGASE_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameJ3TF36_9ENTR
AccessionPrimary (citable) accession number: J3TF36
Entry history
Integrated into UniProtKB/TrEMBL: October 31, 2012
Last sequence update: October 31, 2012
Last modified: June 11, 2014
This is version 12 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)