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Protein
Submitted name:

Limb region 1 protein

Gene

Lmbr1

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Limb region 1 proteinImported
Gene namesi
Name:Lmbr1Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 5

Organism-specific databases

MGIiMGI:1861746. Lmbr1.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei20 – 4021HelicalSequence analysisAdd
BLAST
Transmembranei61 – 8323HelicalSequence analysisAdd
BLAST
Transmembranei95 – 11117HelicalSequence analysisAdd
BLAST
Transmembranei123 – 14422HelicalSequence analysisAdd
BLAST
Transmembranei164 – 18522HelicalSequence analysisAdd
BLAST
Transmembranei264 – 29431HelicalSequence analysisAdd
BLAST
Transmembranei314 – 33926HelicalSequence analysisAdd
BLAST
Transmembranei359 – 37618HelicalSequence analysisAdd
BLAST
Transmembranei396 – 41924HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Expressioni

Gene expression databases

ExpressionAtlasiJ3QM78. baseline and differential.

Family & Domainsi

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili234 – 25724Sequence analysisAdd
BLAST

Sequence similaritiesi

Belongs to the LIMR family.SAAS annotation

Keywords - Domaini

Coiled coilSequence analysis, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

GeneTreeiENSGT00390000007809.

Family and domain databases

InterProiIPR008075. Lipcalin_1_rcpt.
IPR006876. LMBR1-like_membr_prot.
[Graphical view]
PfamiPF04791. LMBR1. 3 hits.
[Graphical view]
PRINTSiPR01692. LIPOCALINIMR.

Sequencei

Sequence statusi: Complete.

J3QM78-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEGQDEVSAR EQHFHSQVRE STICFLLFAI LYIVSYFIII RYKRKSDEQE
60 70 80 90 100
DEDAVVNRIS LFLSTFTLAV SAGAVLLLPF SIISNEILLA FPHNYYIQWL
110 120 130 140 150
NGSLIHGYAG MKGGIRARIL ETLVMLLLLA LLILGMVWVA SALIDSDAAS
160 170 180 190 200
MESLYDLWEF YLPYLYSCIS LMGCLLLLLC TPVGLSRMFT VMGQLLVKPA
210 220 230 240 250
ILEDLDEQIY MITLEEEALQ RRLHGLSSSV EYNVMELEQE LENVKILKTK
260 270 280 290 300
LERRKKASAW ERNLVYPAVM VLLLIETSIS VLLVACNILC LLVDETAMPK
310 320 330 340 350
GTRGPGIGSA SLSTFGFVGA ALEIILIFYL MVSSVVGFYS LRFFGNFTPK
360 370 380 390 400
KDDTTMTKII GNCVSILVLS SALPVMSRTL GITRFDLLGD FGRFNWLGNF
410 420 430 440 450
YIVLSYNLLF AIMTTLCLIR KFTSAVREEL FKALGLHKLH LSDTSRDSET
460
TKPSANGHQK AL
Length:462
Mass (Da):51,839
Last modified:October 3, 2012 - v1
Checksum:i7C7BB73028642428
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC159298 Genomic DNA. No translation available.
AC171500 Genomic DNA. No translation available.
AC175116 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSMUST00000179191; ENSMUSP00000136160; ENSMUSG00000010721.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC159298 Genomic DNA. No translation available.
AC171500 Genomic DNA. No translation available.
AC175116 Genomic DNA. No translation available.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000179191; ENSMUSP00000136160; ENSMUSG00000010721.

Organism-specific databases

MGIiMGI:1861746. Lmbr1.

Phylogenomic databases

GeneTreeiENSGT00390000007809.

Miscellaneous databases

ChiTaRSiLmbr1. mouse.
NextBioi35562810.
SOURCEiSearch...

Gene expression databases

ExpressionAtlasiJ3QM78. baseline and differential.

Family and domain databases

InterProiIPR008075. Lipcalin_1_rcpt.
IPR006876. LMBR1-like_membr_prot.
[Graphical view]
PfamiPF04791. LMBR1. 3 hits.
[Graphical view]
PRINTSiPR01692. LIPOCALINIMR.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  2. Ensembl
    Submitted (AUG-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiJ3QM78_MOUSE
AccessioniPrimary (citable) accession number: J3QM78
Entry historyi
Integrated into UniProtKB/TrEMBL: October 3, 2012
Last sequence update: October 3, 2012
Last modified: May 11, 2016
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.