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J3KCI5

- J3KCI5_COCIM

UniProt

J3KCI5 - J3KCI5_COCIM

Protein

DNA ligase

Gene

CIMG_03804

Organism
Coccidioides immitis (strain RS) (Valley fever fungus)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 9 (01 Oct 2014)
      Sequence version 1 (03 Oct 2012)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: UniProtKB-KW
    3. DNA replication Source: UniProtKB-KW

    Keywords - Molecular functioni

    LigaseUniRule annotationImported

    Keywords - Biological processi

    DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotation, Nucleotide-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
    Gene namesi
    ORF Names:CIMG_03804Imported
    OrganismiCoccidioides immitis (strain RS) (Valley fever fungus)Imported
    Taxonomic identifieri246410 [NCBI]
    Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaPezizomycotinaEurotiomycetesEurotiomycetidaeOnygenalesmitosporic OnygenalesCoccidioides
    ProteomesiUP000001261: Unassembled WGS sequence

    Structurei

    3D structure databases

    ProteinModelPortaliJ3KCI5.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ATP-dependent DNA ligase family.UniRule annotation

    Phylogenomic databases

    KOiK10747.
    OrthoDBiEOG7TXKRG.

    Family and domain databases

    Gene3Di1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProiIPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR00574. dnl1. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    J3KCI5-1 [UniParc]FASTAAdd to Basket

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    MSNPVRKRKR GDPGDPPRTF RSIDSFFKSP RKQPHEADCR IPKSPSEHQL    50
    LTDEELARKL QAEWDNDASS NFRNATPTNS DENQAPPSQD MKASDGQDPI 100
    PAPPKSCVFA SSKKKKSVLS LQTSTSAEDT ISMSLPLDQP PLTFSPSLYL 150
    DKLREFWNTE GGHASYSILA RAFSLVNSTQ SRIRIVDILV NLLRILIEGD 200
    PDSLLPAVWL ATNAFAPPYV PLELGLGGSA ISKALKKAYG LDNLGLKTLY 250
    DKYGDAGDVA YEAKKKQSFT LRRPKPLSIK GVYDSLMKIA NSKGTGSQEN 300
    KQRLVEQLLR DARGAEESRY IVRTLVQHLR IGAVRTTMLI ALARAFLYSR 350
    PPSASYRVHT NADLMKLKRD ELASLYAKAE EMIKASYARH PNYNDLIPCL 400
    LATGISEAVL AKCGLALHVP LLPMLGSITR DLTEMLTKLQ GRKFSCEYKY 450
    DGQRAQVHCD SSGKVSLFSR HLELMTDKYP DLVSLVPQIR GDGVSSFILE 500
    GEVVAVDQES GVLLPFQTLS NRAKKNVEIG DIKINVCLFA FDLMYLNGEA 550
    LLERPFRERR ELLRSLFVEI PNRFSWVKSI DATSSESETI LNFFQEATNA 600
    KCEGIMVKVL DDGTDGEASG ILTSEESSNI SGEKQKASRR RTLLSTYEPD 650
    KRLDSWLKVK KDYNAAFDTL DLIPIAGWHG QGRKAQWWSP ILLAVRNPET 700
    GSLEAVTKCM SGFTDKFYQE NKEKYAENGN NTIPRPSYVE YRNEPEVWFE 750
    PQEVWEIAFA DITLSPTYTA AIGMASEERG LSLRFPRFLR VREDKTIEEA 800
    STSSTLAELW KKQMARLQSE GADLPQEEEN G 831
    Length:831
    Mass (Da):93,023
    Last modified:October 3, 2012 - v1
    Checksum:i307EC902F796CF5D
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    GG704916 Genomic DNA. Translation: EAS32950.2.
    RefSeqiXP_001244363.1. XM_001244362.1.
    XP_001244533.1. XM_001244532.1.

    Genome annotation databases

    GeneIDi4562844.
    4563017.
    KEGGicim:CIMG_03804.
    cim:CIMG_03974.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    GG704916 Genomic DNA. Translation: EAS32950.2 .
    RefSeqi XP_001244363.1. XM_001244362.1.
    XP_001244533.1. XM_001244532.1.

    3D structure databases

    ProteinModelPortali J3KCI5.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 4562844.
    4563017.
    KEGGi cim:CIMG_03804.
    cim:CIMG_03974.

    Phylogenomic databases

    KOi K10747.
    OrthoDBi EOG7TXKRG.

    Family and domain databases

    Gene3Di 1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProi IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR00574. dnl1. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: RSImported.
    2. Cited for: GENOME REANNOTATION.
      Strain: RSImported.

    Entry informationi

    Entry nameiJ3KCI5_COCIM
    AccessioniPrimary (citable) accession number: J3KCI5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 3, 2012
    Last sequence update: October 3, 2012
    Last modified: October 1, 2014
    This is version 9 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3