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J3KCI5

- J3KCI5_COCIM

UniProt

J3KCI5 - J3KCI5_COCIM

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Protein
DNA ligase
Gene
CIMG_03804
Organism
Coccidioides immitis (strain RS) (Valley fever fungus)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC
Complete GO annotation...

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: UniProtKB-KW
  3. DNA replication Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotationImported

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
ORF Names:CIMG_03804Imported
OrganismiCoccidioides immitis (strain RS) (Valley fever fungus)Imported
Taxonomic identifieri246410 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaPezizomycotinaEurotiomycetesEurotiomycetidaeOnygenalesmitosporic OnygenalesCoccidioides
ProteomesiUP000001261: Unassembled WGS sequence

Structurei

3D structure databases

ProteinModelPortaliJ3KCI5.

Family & Domainsi

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

KOiK10747.
OrthoDBiEOG7TXKRG.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

J3KCI5-1 [UniParc]FASTAAdd to Basket

« Hide

MSNPVRKRKR GDPGDPPRTF RSIDSFFKSP RKQPHEADCR IPKSPSEHQL    50
LTDEELARKL QAEWDNDASS NFRNATPTNS DENQAPPSQD MKASDGQDPI 100
PAPPKSCVFA SSKKKKSVLS LQTSTSAEDT ISMSLPLDQP PLTFSPSLYL 150
DKLREFWNTE GGHASYSILA RAFSLVNSTQ SRIRIVDILV NLLRILIEGD 200
PDSLLPAVWL ATNAFAPPYV PLELGLGGSA ISKALKKAYG LDNLGLKTLY 250
DKYGDAGDVA YEAKKKQSFT LRRPKPLSIK GVYDSLMKIA NSKGTGSQEN 300
KQRLVEQLLR DARGAEESRY IVRTLVQHLR IGAVRTTMLI ALARAFLYSR 350
PPSASYRVHT NADLMKLKRD ELASLYAKAE EMIKASYARH PNYNDLIPCL 400
LATGISEAVL AKCGLALHVP LLPMLGSITR DLTEMLTKLQ GRKFSCEYKY 450
DGQRAQVHCD SSGKVSLFSR HLELMTDKYP DLVSLVPQIR GDGVSSFILE 500
GEVVAVDQES GVLLPFQTLS NRAKKNVEIG DIKINVCLFA FDLMYLNGEA 550
LLERPFRERR ELLRSLFVEI PNRFSWVKSI DATSSESETI LNFFQEATNA 600
KCEGIMVKVL DDGTDGEASG ILTSEESSNI SGEKQKASRR RTLLSTYEPD 650
KRLDSWLKVK KDYNAAFDTL DLIPIAGWHG QGRKAQWWSP ILLAVRNPET 700
GSLEAVTKCM SGFTDKFYQE NKEKYAENGN NTIPRPSYVE YRNEPEVWFE 750
PQEVWEIAFA DITLSPTYTA AIGMASEERG LSLRFPRFLR VREDKTIEEA 800
STSSTLAELW KKQMARLQSE GADLPQEEEN G 831
Length:831
Mass (Da):93,023
Last modified:October 3, 2012 - v1
Checksum:i307EC902F796CF5D
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
GG704916 Genomic DNA. Translation: EAS32950.2.
RefSeqiXP_001244363.1. XM_001244362.1.
XP_001244533.1. XM_001244532.1.

Genome annotation databases

GeneIDi4562844.
4563017.
KEGGicim:CIMG_03804.
cim:CIMG_03974.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
GG704916 Genomic DNA. Translation: EAS32950.2 .
RefSeqi XP_001244363.1. XM_001244362.1.
XP_001244533.1. XM_001244532.1.

3D structure databases

ProteinModelPortali J3KCI5.
ModBasei Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 4562844.
4563017.
KEGGi cim:CIMG_03804.
cim:CIMG_03974.

Phylogenomic databases

KOi K10747.
OrthoDBi EOG7TXKRG.

Family and domain databases

Gene3Di 1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProi IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RS.
  2. Cited for: GENOME REANNOTATION.
    Strain: RS.

Entry informationi

Entry nameiJ3KCI5_COCIM
AccessioniPrimary (citable) accession number: J3KCI5
Entry historyi
Integrated into UniProtKB/TrEMBL: October 3, 2012
Last sequence update: October 3, 2012
Last modified: November 13, 2013
This is version 8 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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