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Protein
Submitted name:

Alpha amylase domain protein

Gene

TTHERM_00411610

Organism
Tetrahymena thermophila (strain SB210)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. catalytic activity Source: InterPro
  2. cation binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha amylase domain proteinImported
Gene namesi
ORF Names:TTHERM_00411610Imported
OrganismiTetrahymena thermophila (strain SB210)Imported
Taxonomic identifieri312017 [NCBI]
Taxonomic lineageiEukaryotaAlveolataCiliophoraIntramacronucleataOligohymenophoreaHymenostomatidaTetrahymeninaTetrahymenidaeTetrahymena
ProteomesiUP000009168: Unassembled WGS sequence

Structurei

3D structure databases

ProteinModelPortaliI7LW22.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

InParanoidiI7LW22.
KOiK01176.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

I7LW22-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MSKLQFVLIA ALLLVAVSAK TAQEWKTRNI YQIITDRFAL GDGSKPYCDL
60 70 80 90 100
NKQPYYCGGN FKGIENNLDY IQGMGFNAIW ISPVPDNYPN QFHGYAAKNM
110 120 130 140 150
TEINSHFGGA DGLKSLIDAC HKRDIWVMID VVANHMGNTD QNYSENIPFN
160 170 180 190 200
SPDHYHSYCI ISDSDFATKN MYNIQHCRLA GLADLNQENS YVSNYLVNWI
210 220 230 240 250
KDLVQTYNVD GIRIDTVPEV HPDFWKQYTT SAGVFATGEV FDGDFGYVAS
260 270 280 290 300
YIPSVGSVLN YPWYFNMRDI FVNQKDMWGV RTYYQNWANQ HADLSILTPF
310 320 330 340 350
VDNHDNPRFL SDQVFNNGKD RNTRIQLLKG YTTFTLTSIG IPILYYGTEQ
360 370 380 390 400
YFSGNTDPYD REPLWNSLNT NSDMYKYVQS ILYAKNITNA GLQGQTEAYC
410 420 430 440 450
DQDLYAFFRG KLFVGVTSKF NQVTRQIVTH PFSNGEVICN IFYPTQDCLT
460 470 480
ITNNSFNLVL IGGEAKIFVP KSLLQKSSQF LRSASS
Length:486
Mass (Da):55,363
Last modified:October 3, 2012 - v1
Checksum:i21A4771D8D27C583
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GG662612 Genomic DNA. Translation: EAS00610.1.
RefSeqiXP_001020855.1. XM_001020855.2.
UniGeneiTth.5643.

Genome annotation databases

EnsemblProtistsiEAS00610; EAS00610; TTHERM_00411610.
GeneIDi7825464.
KEGGitet:TTHERM_00411610.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GG662612 Genomic DNA. Translation: EAS00610.1.
RefSeqiXP_001020855.1. XM_001020855.2.
UniGeneiTth.5643.

3D structure databases

ProteinModelPortaliI7LW22.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsiEAS00610; EAS00610; TTHERM_00411610.
GeneIDi7825464.
KEGGitet:TTHERM_00411610.

Phylogenomic databases

InParanoidiI7LW22.
KOiK01176.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote."
    Eisen J.A., Coyne R.S., Wu M., Wu D., Thiagarajan M., Wortman J.R., Badger J.H., Ren Q., Amedeo P., Jones K.M., Tallon L.J., Delcher A.L., Salzberg S.L., Silva J.C., Haas B.J., Majoros W.H., Farzad M., Carlton J.M.
    , Smith R.K. Jr., Garg J., Pearlman R.E., Karrer K.M., Sun L., Manning G., Elde N.C., Turkewitz A.P., Asai D.J., Wilkes D.E., Wang Y., Cai H., Collins K., Stewart B.A., Lee S.R., Wilamowska K., Weinberg Z., Ruzzo W.L., Wloga D., Gaertig J., Frankel J., Tsao C.-C., Gorovsky M.A., Keeling P.J., Waller R.F., Patron N.J., Cherry J.M., Stover N.A., Krieger C.J., del Toro C., Ryder H.F., Williamson S.C., Barbeau R.A., Hamilton E.P., Orias E.
    PLoS Biol. 4:1620-1642(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SB210Imported.

Entry informationi

Entry nameiI7LW22_TETTS
AccessioniPrimary (citable) accession number: I7LW22
Entry historyi
Integrated into UniProtKB/TrEMBL: October 3, 2012
Last sequence update: October 3, 2012
Last modified: January 7, 2015
This is version 11 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.