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Protein
Submitted name:

Pyridoxal-dependent decarboxylase domain protein

Gene

TTHERM_00289080

Organism
Tetrahymena thermophila (strain SB210)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotation

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Pyridoxal-dependent decarboxylase domain proteinImported
Gene namesi
ORF Names:TTHERM_00289080Imported
OrganismiTetrahymena thermophila (strain SB210)Imported
Taxonomic identifieri312017 [NCBI]
Taxonomic lineageiEukaryotaAlveolataCiliophoraIntramacronucleataOligohymenophoreaHymenostomatidaTetrahymeninaTetrahymenidaeTetrahymena
ProteomesiUP000009168 Componenti: Unassembled WGS sequence

Interactioni

Protein-protein interaction databases

STRINGi5911.EAR98380.

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

InParanoidiI7LVK0.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.

Sequencei

Sequence statusi: Complete.

I7LVK0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEQQDQHLLA NDKKLNEKFL DDVFQILKKI ILECKTGNGK VIDFKTPDQL
60 70 80 90 100
IKEIDLTLPL KGQSDEEIIN FIKLVDKYSV KTSHSHFFNN LFGGSNEYSL
110 120 130 140 150
AGDYFTSTIN GSMYTYEMAP VFNFMENAIQ QLFAERYLKW STIDGVFCPG
160 170 180 190 200
GSQSNFYGIL AARQHKYPEF KRKGLRALPD LKLFTSELAH YSIEKGAIML
210 220 230 240 250
GFGLDSVVKI ACDEEGRMIP EEFEKEIQKC IQEGSVPLMV NLTCGTTVFG
260 270 280 290 300
VVDPINKCTE IAQKYNMWVH IDGCWGGHLI FLEEFRNKYS LISQADSFAW
310 320 330 340 350
DAHKLFNVPQ QCTAFFTRHV GLLHEANALG SDYLFMKDKK LYDATKYDSG
360 370 380 390 400
DKTYQCARHI DVFKFWIYWK HFGTLGLEQI VADSLETTKY FAQLVKDHPN
410 420 430 440 450
CELINEPEYV SVSFFYYPDS FLKRKELGED KTEKFWEDMH NIPPIIKAKM
460 470 480 490 500
VEQGTMMVAY QKQNQKSIQR KNFFRFIFTA DKGKEEAQFA LNEIHRLGKD

L
Length:501
Mass (Da):57,959
Last modified:October 3, 2012 - v1
Checksum:i8BD047199BED73EC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GG662651 Genomic DNA. Translation: EAR98380.2.
RefSeqiXP_001018625.2. XM_001018625.2.

Genome annotation databases

EnsemblProtistsiEAR98380; EAR98380; TTHERM_00289080.
GeneIDi7846854.
KEGGitet:TTHERM_00289080.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GG662651 Genomic DNA. Translation: EAR98380.2.
RefSeqiXP_001018625.2. XM_001018625.2.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi5911.EAR98380.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsiEAR98380; EAR98380; TTHERM_00289080.
GeneIDi7846854.
KEGGitet:TTHERM_00289080.

Phylogenomic databases

InParanoidiI7LVK0.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote."
    Eisen J.A., Coyne R.S., Wu M., Wu D., Thiagarajan M., Wortman J.R., Badger J.H., Ren Q., Amedeo P., Jones K.M., Tallon L.J., Delcher A.L., Salzberg S.L., Silva J.C., Haas B.J., Majoros W.H., Farzad M., Carlton J.M.
    , Smith R.K. Jr., Garg J., Pearlman R.E., Karrer K.M., Sun L., Manning G., Elde N.C., Turkewitz A.P., Asai D.J., Wilkes D.E., Wang Y., Cai H., Collins K., Stewart B.A., Lee S.R., Wilamowska K., Weinberg Z., Ruzzo W.L., Wloga D., Gaertig J., Frankel J., Tsao C.-C., Gorovsky M.A., Keeling P.J., Waller R.F., Patron N.J., Cherry J.M., Stover N.A., Krieger C.J., del Toro C., Ryder H.F., Williamson S.C., Barbeau R.A., Hamilton E.P., Orias E.
    PLoS Biol. 4:1620-1642(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SB210Imported.

Entry informationi

Entry nameiI7LVK0_TETTS
AccessioniPrimary (citable) accession number: I7LVK0
Entry historyi
Integrated into UniProtKB/TrEMBL: October 3, 2012
Last sequence update: October 3, 2012
Last modified: June 24, 2015
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.