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Protein
Submitted name:

DNA primase small subunit

Gene

MSMEI_6136

Organism
Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
DNA primase small subunitImported (EC:6.5.1.1Imported)
Submitted name:
Mycobacterium smegmatis str. MC2 155, complete genomeImported
Gene namesi
Ordered Locus Names:MSMEI_6136Imported
ORF Names:LJ00_31150Imported
OrganismiMycobacterium smegmatis (strain ATCC 700084 / mc(2)155)Imported
Taxonomic identifieri246196 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaCorynebacterialesMycobacteriaceaeMycobacterium
ProteomesiUP000006158 Componenti: Chromosome UP000029906 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi246196.MSMEG_6301.

Family & Domainsi

Phylogenomic databases

OMAiFHPWPVR.

Family and domain databases

InterProiIPR002755. DNA_primase_S.
IPR014145. LigD_pol_dom.
[Graphical view]
PfamiPF01896. DNA_primase_S. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.

Sequencei

Sequence statusi: Complete.

I7GFM1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASAATELDV DGVKVRFTNP DKVYFPKLGK NGTKGKLVEY YLSVASGPML
60 70 80 90 100
ALLRDRPVHL QRFPDGIEGE EIYQKRVPQK HPDYLETCVV TFPSGRTADA
110 120 130 140 150
LKITHPSSII WAAQMGTVTL HPWQVRCPDT EHPDELRVDL DPQPGTGFKE
160 170 180 190 200
ARTVACDVLK PLLDELGLVG YPKTSGGRGV HVFLRIKPQW DFIEVRRAGI
210 220 230 240 250
ALAREVERRA PDAVTTSWWK EERGERLFID YNQNARDRTF ASAYSVRKTP
260 270 280 290 300
IATVSMPLSW DELRNADPDD YTMNTVPDLL AGRDDPWADI DSVQQSLGPL
310 320 330 340
LDLVAADEER GLGDLPYPPN YPKMPGEPPR VQPSKKVAEH WDEQGNRKQ
Length:349
Mass (Da):39,233
Last modified:October 3, 2012 - v1
Checksum:i4EE4B208A3F58530
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001663 Genomic DNA. Translation: AFP42566.1.
CP009494 Genomic DNA. Translation: AIU11290.1.
RefSeqiWP_014878612.1. NC_018289.1.
YP_006570861.1. NC_018289.1.

Genome annotation databases

EnsemblBacteriaiAFP42566; AFP42566; MSMEI_6136.
AIU11290; AIU11290; LJ00_31150.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001663 Genomic DNA. Translation: AFP42566.1.
CP009494 Genomic DNA. Translation: AIU11290.1.
RefSeqiWP_014878612.1. NC_018289.1.
YP_006570861.1. NC_018289.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi246196.MSMEG_6301.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAFP42566; AFP42566; MSMEI_6136.
AIU11290; AIU11290; LJ00_31150.

Phylogenomic databases

OMAiFHPWPVR.

Family and domain databases

InterProiIPR002755. DNA_primase_S.
IPR014145. LigD_pol_dom.
[Graphical view]
PfamiPF01896. DNA_primase_S. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: MC2 155Imported.
  2. "Interrupted coding sequences in Mycobacterium smegmatis: authentic mutations or sequencing errors?"
    Deshayes C., Perrodou E., Gallien S., Euphrasie D., Schaeffer C., Van-Dorsselaer A., Poch O., Lecompte O., Reyrat J.-M.
    Genome Biol. 8:R20.1-R20.9(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700084 / mc(2)155Imported and MC2 155Imported.
  3. "Ortho-proteogenomics: multiple proteomes investigation through orthology and a new MS-based protocol."
    Gallien S., Perrodou E., Carapito C., Deshayes C., Reyrat J.-M., Van Dorsselaer A., Poch O., Schaeffer C., Lecompte O.
    Genome Res. 19:128-135(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700084 / mc(2)155 and MC2 155.
  4. "Complete genome sequences of a Mycobacterium smegmatis laboratory strain (MC2 155) and isoniazid-resistant (4XR1/R2) mutant strains."
    Mohan A., Padiadpu J., Baloni P., Chandra N.
    Genome Announc. 3:E01520-E01520(2015) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700084 / mc(2)155Imported and MC2 155Imported.

Entry informationi

Entry nameiI7GFM1_MYCS2
AccessioniPrimary (citable) accession number: I7GFM1
Entry historyi
Integrated into UniProtKB/TrEMBL: October 3, 2012
Last sequence update: October 3, 2012
Last modified: June 24, 2015
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.