Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

I7F280

- I7F280_PHAIB

UniProt

I7F280 - I7F280_PHAIB

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Submitted name:

Putative ATP dependent DNA ligase

Gene

PGA1_262p00500

Organism
Phaeobacter inhibens (strain ATCC 700781 / DSM 17395 / CIP 105210 / NBRC 16654 / BS107)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPGAL391619:GLIE-3662-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:PGA1_262p00500Imported
Encoded oniPlasmid pPGA1_262Imported
OrganismiPhaeobacter inhibens (strain ATCC 700781 / DSM 17395 / CIP 105210 / NBRC 16654 / BS107)Imported
Taxonomic identifieri391619 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaePhaeobacter
ProteomesiUP000002914: Plasmid pPGA1_262

Structurei

3D structure databases

ProteinModelPortaliI7F280.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I7F280-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MQAFAELLEQ LAFTPSRNGK IAHLTTAFAT IPDPERGYAL AAITGDLALR
60 70 80 90 100
NVTPSLLRGL VAEETDPELF RLSYDFVGDL AETVALIWPH SDTVIDLSLT
110 120 130 140 150
DAVHELTNTA KAQLPALIAR RLSQMTPTQR YAYLKLATGG LRVGVSARLA
160 170 180 190 200
RSALAQFGDV DVTEIEELWH GLTPPYLPLF AWLEGGEKPV NLAAAPFRPV
210 220 230 240 250
MLSTGTDLED LASLSPADFI AEWKWDGIRV QAVNDKGTRR LYSRTGEDIS
260 270 280 290 300
GSFPDVIEAL NFDGVLDGEL LVKRGDSVAP FGDLQKRLGR KKVGKAMLAS
310 320 330 340 350
HPAALRVYDV LYWNGEDLRP RTLADRQIHL KTCVCDLRDP RIDLSLPLDF
360 370 380 390 400
ETWEDLAKLR ADPPNSVIEG VMIKRRDSAY IAGRKRGYWF KWKRDPMLVD
410 420 430 440 450
AVMLYAQRGH GKRSGYYSDF TFGVWNDDQL VPVGKAYFGF TDAELKELDR
460 470 480 490 500
FVRNNTIDRF GPVRAVKPEL VLEVAFEGLN ESSRHKSGLA MRFPRINRIR
510
TDKPALEAGT LAELRAFL
Length:518
Mass (Da):57,826
Last modified:October 3, 2012 - v1
Checksum:iD4B238FAA9F9E884
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002977 Genomic DNA. Translation: AFO93332.1.
RefSeqiYP_006575051.1. NC_018291.1.

Genome annotation databases

EnsemblBacteriaiAFO93332; AFO93332; PGA1_262p00500.
GeneIDi13420362.
KEGGipga:PGA1_262p00500.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002977 Genomic DNA. Translation: AFO93332.1 .
RefSeqi YP_006575051.1. NC_018291.1.

3D structure databases

ProteinModelPortali I7F280.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AFO93332 ; AFO93332 ; PGA1_262p00500 .
GeneIDi 13420362.
KEGGi pga:PGA1_262p00500.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci PGAL391619:GLIE-3662-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Phaeobacter gallaeciensis genomes from globally opposite locations reveal high similarity of adaptation to surface life."
    Thole S., Kalhoefer D., Voget S., Berger M., Engelhardt T., Liesegang H., Wollherr A., Kjelleberg S., Daniel R., Simon M., Thomas T., Brinkhoff T.
    ISME J. 6:2229-2244(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiI7F280_PHAIB
AccessioniPrimary (citable) accession number: I7F280
Entry historyi
Integrated into UniProtKB/TrEMBL: October 3, 2012
Last sequence update: October 3, 2012
Last modified: October 29, 2014
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, PlasmidImported, Reference proteomeImported

External Data

Dasty 3