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I7F280

- I7F280_PHAIB

UniProt

I7F280 - I7F280_PHAIB

Protein
Submitted name:

Putative ATP dependent DNA ligase

Gene

PGA1_262p00500

Organism
Phaeobacter inhibens (strain ATCC 700781 / DSM 17395 / CIP 105210 / NBRC 16654 / BS107)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 14 (01 Oct 2014)
      Sequence version 1 (03 Oct 2012)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciPGAL391619:GLIE-3662-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative ATP dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:PGA1_262p00500Imported
    Encoded oniPlasmid pPGA1_262Imported
    OrganismiPhaeobacter inhibens (strain ATCC 700781 / DSM 17395 / CIP 105210 / NBRC 16654 / BS107)Imported
    Taxonomic identifieri391619 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaePhaeobacter
    ProteomesiUP000002914: Plasmid pPGA1_262

    Structurei

    3D structure databases

    ProteinModelPortaliI7F280.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    I7F280-1 [UniParc]FASTAAdd to Basket

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    MQAFAELLEQ LAFTPSRNGK IAHLTTAFAT IPDPERGYAL AAITGDLALR    50
    NVTPSLLRGL VAEETDPELF RLSYDFVGDL AETVALIWPH SDTVIDLSLT 100
    DAVHELTNTA KAQLPALIAR RLSQMTPTQR YAYLKLATGG LRVGVSARLA 150
    RSALAQFGDV DVTEIEELWH GLTPPYLPLF AWLEGGEKPV NLAAAPFRPV 200
    MLSTGTDLED LASLSPADFI AEWKWDGIRV QAVNDKGTRR LYSRTGEDIS 250
    GSFPDVIEAL NFDGVLDGEL LVKRGDSVAP FGDLQKRLGR KKVGKAMLAS 300
    HPAALRVYDV LYWNGEDLRP RTLADRQIHL KTCVCDLRDP RIDLSLPLDF 350
    ETWEDLAKLR ADPPNSVIEG VMIKRRDSAY IAGRKRGYWF KWKRDPMLVD 400
    AVMLYAQRGH GKRSGYYSDF TFGVWNDDQL VPVGKAYFGF TDAELKELDR 450
    FVRNNTIDRF GPVRAVKPEL VLEVAFEGLN ESSRHKSGLA MRFPRINRIR 500
    TDKPALEAGT LAELRAFL 518
    Length:518
    Mass (Da):57,826
    Last modified:October 3, 2012 - v1
    Checksum:iD4B238FAA9F9E884
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002977 Genomic DNA. Translation: AFO93332.1.
    RefSeqiWP_014881681.1. NC_018291.1.
    YP_006575051.1. NC_018291.1.

    Genome annotation databases

    EnsemblBacteriaiAFO93332; AFO93332; PGA1_262p00500.
    GeneIDi13420362.
    KEGGipga:PGA1_262p00500.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002977 Genomic DNA. Translation: AFO93332.1 .
    RefSeqi WP_014881681.1. NC_018291.1.
    YP_006575051.1. NC_018291.1.

    3D structure databases

    ProteinModelPortali I7F280.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AFO93332 ; AFO93332 ; PGA1_262p00500 .
    GeneIDi 13420362.
    KEGGi pga:PGA1_262p00500.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci PGAL391619:GLIE-3662-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Phaeobacter gallaeciensis genomes from globally opposite locations reveal high similarity of adaptation to surface life."
      Thole S., Kalhoefer D., Voget S., Berger M., Engelhardt T., Liesegang H., Wollherr A., Kjelleberg S., Daniel R., Simon M., Thomas T., Brinkhoff T.
      ISME J. 6:2229-2244(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

    Entry informationi

    Entry nameiI7F280_PHAIB
    AccessioniPrimary (citable) accession number: I7F280
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 3, 2012
    Last sequence update: October 3, 2012
    Last modified: October 1, 2014
    This is version 14 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, PlasmidImported, Reference proteomeImported

    External Data

    Dasty 3