I7F280 (I7F280_PHAGD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative ATP dependent DNA ligase EMBL AFO93332.1

Gene names

Ordered Locus Names:

PGA1_262p00500 EMBL AFO93332.1

Encoded on

Plasmid pPGA1_262 EMBL AFO93332.1

Organism

Phaeobacter gallaeciensis (strain ATCC 700781 / DSM 17395 / CIP 105210 / NBRC 16654 / BS107) (Roseobacter gallaeciensis) [Complete proteome] [HAMAP] EMBL AFO93332.1

Taxonomic identifier

391619 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhodobacterales › Rhodobacteraceae › Phaeobacter › Phaeobacter gallaeciensis

Protein attributes

Sequence length	518 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL AFO93332.1
Technical term	Complete proteome Plasmid EMBL AFO93332.1
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	I7F280 [UniParc]. Last modified October 3, 2012. Version 1. Checksum: D4B238FAA9F9E884	FASTA	518	57,826
	10 20 30 40 50 60 MQAFAELLEQ LAFTPSRNGK IAHLTTAFAT IPDPERGYAL AAITGDLALR NVTPSLLRGL 70 80 90 100 110 120 VAEETDPELF RLSYDFVGDL AETVALIWPH SDTVIDLSLT DAVHELTNTA KAQLPALIAR 130 140 150 160 170 180 RLSQMTPTQR YAYLKLATGG LRVGVSARLA RSALAQFGDV DVTEIEELWH GLTPPYLPLF 190 200 210 220 230 240 AWLEGGEKPV NLAAAPFRPV MLSTGTDLED LASLSPADFI AEWKWDGIRV QAVNDKGTRR 250 260 270 280 290 300 LYSRTGEDIS GSFPDVIEAL NFDGVLDGEL LVKRGDSVAP FGDLQKRLGR KKVGKAMLAS 310 320 330 340 350 360 HPAALRVYDV LYWNGEDLRP RTLADRQIHL KTCVCDLRDP RIDLSLPLDF ETWEDLAKLR 370 380 390 400 410 420 ADPPNSVIEG VMIKRRDSAY IAGRKRGYWF KWKRDPMLVD AVMLYAQRGH GKRSGYYSDF 430 440 450 460 470 480 TFGVWNDDQL VPVGKAYFGF TDAELKELDR FVRNNTIDRF GPVRAVKPEL VLEVAFEGLN 490 500 510 ESSRHKSGLA MRFPRINRIR TDKPALEAGT LAELRAFL

References

[1]

"Phaeobacter gallaeciensis genomes from globally opposite locations reveal high similarity of adaptation to surface life." Thole S., Kalhoefer D., Voget S., Berger M., Engelhardt T., Liesegang H., Wollherr A., Kjelleberg S., Daniel R., Simon M., Thomas T., Brinkhoff T. ISME J. 0:0-0(2012) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 17395 EMBL AFO93332.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002977 Genomic DNA. Translation: AFO93332.1.
RefSeq	YP_006575051.1. NC_018291.1.
3D structure databases
ProteinModelPortal	I7F280.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AFO93332; AFO93332; PGA1_262p00500.
GeneID	13420362.
KEGG	pga:PGA1_262p00500.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01971.
Enzyme and pathway databases
BioCyc	PGAL391619:GLIE-3662-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

I7F280_PHAGD

Accession

Primary (citable) accession number: I7F280

Entry history

Integrated into UniProtKB/TrEMBL:	October 3, 2012
Last sequence update:	October 3, 2012
Last modified:	May 29, 2013
This is version 8 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)