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Protein
Submitted name:

Putative ATP dependent DNA ligase

Gene

PGA1_262p00500

Organism
Phaeobacter inhibens (strain ATCC 700781 / DSM 17395 / CIP 105210 / NBRC 16654 / BS107)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPGAL391619:GLIE-3662-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:PGA1_262p00500Imported
Encoded oniPlasmid pPGA1_262Imported
OrganismiPhaeobacter inhibens (strain ATCC 700781 / DSM 17395 / CIP 105210 / NBRC 16654 / BS107)Imported
Taxonomic identifieri391619 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaePhaeobacter
ProteomesiUP000002914: Plasmid pPGA1_262

Family & Domainsi

Phylogenomic databases

KOiK10747.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I7F280-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQAFAELLEQ LAFTPSRNGK IAHLTTAFAT IPDPERGYAL AAITGDLALR
60 70 80 90 100
NVTPSLLRGL VAEETDPELF RLSYDFVGDL AETVALIWPH SDTVIDLSLT
110 120 130 140 150
DAVHELTNTA KAQLPALIAR RLSQMTPTQR YAYLKLATGG LRVGVSARLA
160 170 180 190 200
RSALAQFGDV DVTEIEELWH GLTPPYLPLF AWLEGGEKPV NLAAAPFRPV
210 220 230 240 250
MLSTGTDLED LASLSPADFI AEWKWDGIRV QAVNDKGTRR LYSRTGEDIS
260 270 280 290 300
GSFPDVIEAL NFDGVLDGEL LVKRGDSVAP FGDLQKRLGR KKVGKAMLAS
310 320 330 340 350
HPAALRVYDV LYWNGEDLRP RTLADRQIHL KTCVCDLRDP RIDLSLPLDF
360 370 380 390 400
ETWEDLAKLR ADPPNSVIEG VMIKRRDSAY IAGRKRGYWF KWKRDPMLVD
410 420 430 440 450
AVMLYAQRGH GKRSGYYSDF TFGVWNDDQL VPVGKAYFGF TDAELKELDR
460 470 480 490 500
FVRNNTIDRF GPVRAVKPEL VLEVAFEGLN ESSRHKSGLA MRFPRINRIR
510
TDKPALEAGT LAELRAFL
Length:518
Mass (Da):57,826
Last modified:October 3, 2012 - v1
Checksum:iD4B238FAA9F9E884
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002977 Genomic DNA. Translation: AFO93332.1.
RefSeqiYP_006575051.1. NC_018291.1.

Genome annotation databases

EnsemblBacteriaiAFO93332; AFO93332; PGA1_262p00500.
GeneIDi13420362.
KEGGipga:PGA1_262p00500.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002977 Genomic DNA. Translation: AFO93332.1.
RefSeqiYP_006575051.1. NC_018291.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAFO93332; AFO93332; PGA1_262p00500.
GeneIDi13420362.
KEGGipga:PGA1_262p00500.

Phylogenomic databases

KOiK10747.

Enzyme and pathway databases

BioCyciPGAL391619:GLIE-3662-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Phaeobacter gallaeciensis genomes from globally opposite locations reveal high similarity of adaptation to surface life."
    Thole S., Kalhoefer D., Voget S., Berger M., Engelhardt T., Liesegang H., Wollherr A., Kjelleberg S., Daniel R., Simon M., Thomas T., Brinkhoff T.
    ISME J. 6:2229-2244(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiI7F280_PHAIB
AccessioniPrimary (citable) accession number: I7F280
Entry historyi
Integrated into UniProtKB/TrEMBL: October 3, 2012
Last sequence update: October 3, 2012
Last modified: March 4, 2015
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, PlasmidImported, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.