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Protein

Superoxide dismutase

Gene

sodB

Organism
Phaeobacter gallaeciensis (strain 2.10) (Roseobacter gallaeciensis)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotationImported

Enzyme and pathway databases

BioCyciPGAL383629:GLID-1817-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutaseUniRule annotation (EC:1.15.1.1UniRule annotation)
Gene namesi
Name:sodBImported
Ordered Locus Names:PGA2_c18180Imported
OrganismiPhaeobacter gallaeciensis (strain 2.10) (Roseobacter gallaeciensis)Imported
Taxonomic identifieri383629 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaePhaeobacter
ProteomesiUP000002913 Componenti: Chromosome

Family & Domainsi

Sequence similaritiesi

Belongs to the iron/manganese superoxide dismutase family.UniRule annotation

Phylogenomic databases

KOiK04564.

Family and domain databases

InterProiIPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view]
PANTHERiPTHR11404. PTHR11404. 1 hit.
PfamiPF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiPS00088. SOD_MN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I7DQQ6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAFELPDLPY AHDALASKGM SAETLEYHHD LHHKAYVDNG NKLIAGTEWD
60 70 80 90 100
GKSMEEIIKG TYDANAVAQS GIFNNISQLW NHNQFWEMMG PGESKMPGEL
110 120 130 140 150
EKALVDSFGS VDTFKEEFSA AGAGQFGSGW AWLVKDTDGG LKVTKTENGV
160 170 180 190
NPVCFGQTAL LGCDVWEHSY YIDFRNKRPA YLTNFLDNLV NWENVASRM
Length:199
Mass (Da):22,179
Last modified:October 3, 2012 - v1
Checksum:i0EF226264478D20B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002972 Genomic DNA. Translation: AFO87814.1.
RefSeqiWP_014874932.1. NC_018286.1.

Genome annotation databases

EnsemblBacteriaiAFO87814; AFO87814; PGA2_c18180.
KEGGipgl:PGA2_c18180.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002972 Genomic DNA. Translation: AFO87814.1.
RefSeqiWP_014874932.1. NC_018286.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAFO87814; AFO87814; PGA2_c18180.
KEGGipgl:PGA2_c18180.

Phylogenomic databases

KOiK04564.

Enzyme and pathway databases

BioCyciPGAL383629:GLID-1817-MONOMER.

Family and domain databases

InterProiIPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view]
PANTHERiPTHR11404. PTHR11404. 1 hit.
PfamiPF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiPS00088. SOD_MN. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Phaeobacter gallaeciensis genomes from globally opposite locations reveal high similarity of adaptation to surface life."
    Thole S., Kalhoefer D., Voget S., Berger M., Engelhardt T., Liesegang H., Wollherr A., Kjelleberg S., Daniel R., Simon M., Thomas T., Brinkhoff T.
    ISME J. 6:2229-2244(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 2.10Imported.

Entry informationi

Entry nameiI7DQQ6_PHAG2
AccessioniPrimary (citable) accession number: I7DQQ6
Entry historyi
Integrated into UniProtKB/TrEMBL: October 3, 2012
Last sequence update: October 3, 2012
Last modified: July 22, 2015
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.