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I7CDZ3 (I7CDZ3_PSEPT) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 13. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:T1E_5615 EMBL AFO51436.1
OrganismPseudomonas putida (strain DOT-T1E) [Complete proteome] [HAMAP] EMBL AFO51436.1
Taxonomic identifier1196325 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas

Protein attributes

Sequence length833 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AFO51436.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
I7CDZ3 [UniParc].

Last modified October 3, 2012. Version 1.
Checksum: F6BC5ABCBC366EE5

FASTA83393,576
        10         20         30         40         50         60 
MAKPLQEYAR KRDFNATPEP SGKRKRGKRA HALQFCIQKH DASHLHYDFR LELDGTLKSW 

        70         80         90        100        110        120 
AIPKGPSLDP KVRRLAVHVE DHPLDYADFE GHIPEGHYGA GDVIVWDRGI WEPEGDAHEA 

       130        140        150        160        170        180 
YVKGKLRFRL QGEKLAGVWN LFRTHLAGKK EQWMLVKSHD AQARSETEYS IVEALPDSVL 

       190        200        210        220        230        240 
SERTLVPRKS AAKKATAPRS SRKRADKVQA APLPAQLQPQ LATLVDSPPS GDWRYEVKFD 

       250        260        270        280        290        300 
GYRILARIEG QDIRLFTRNG HDWSSKMPRQ VAALRALGID SAWLDGEMVV ADENGMADFQ 

       310        320        330        340        350        360 
ALQNAFDTEH DERITYYLFD LPFLRGQDLR QLPLQHRRDT LRQLLEHNHS DFIKYSADFD 

       370        380        390        400        410        420 
EPVESLLDSA CRLKLEGLIG KRADSVYSGR RSPDWIKLKC KQRQEFVIVG YTDPKGSRSG 

       430        440        450        460        470        480 
FGALLLALHD NERGELRYAG KVGTGFNTTT LASIHTRLKP LEIACPALPS PPAGAEARGV 

       490        500        510        520        530        540 
HWLRPQLLAE VAFAQMTRDG IVRHSVFHGL RDDKAATAID LERAMPAKTV SNRNKQAKAS 

       550        560        570        580        590        600 
ENLGELRLTH PDRVIDPTTG VTKREVAEYY AGISQWILPQ LKHRPVALVR APDGLGGELF 

       610        620        630        640        650        660 
FQKNAGQLHI PNVLSYEKAE AGQAAMVINR PDTLLGAVQM NTLELHTWNA TDKDFDKPDR 

       670        680        690        700        710        720 
FVLDLDPDPA LPWKAMVEAT QLALTLLDEL GLKVFLKTSG GKGIHVVVPL TRRAGWDEVK 

       730        740        750        760        770        780 
DFSHAIVNYL AKLFPERLSA VSGPKNRVGR IFIDYLRNGK GATTACAYSL RARDGLPVSV 

       790        800        810        820        830 
PIWREELAQI KAANQWNITN LHERLAEVDD PWADMGKVRQ SITARMRKQL GLE 

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References

[1]"Metabolic potential of the organic-solvent tolerant Pseudomonas putida DOT-T1E deduced from its annotated genome."
Udaondo Z., Molina L., Daniels C., Gomez M.J., Molina-Henares M.A., Matilla M.A., Roca A., Fernandez M., Duque E., Segura A., Ramos J.L.
Microb. Biotechnol. 6:598-611(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DOT-T1E.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP003734 Genomic DNA. Translation: AFO51436.1.
RefSeqYP_006536230.1. NC_018220.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFO51436; AFO51436; T1E_5615.
GeneID13343222.
KEGGppx:T1E_5615.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycPPUT1196325:GLIV-5659-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameI7CDZ3_PSEPT
AccessionPrimary (citable) accession number: I7CDZ3
Entry history
Integrated into UniProtKB/TrEMBL: October 3, 2012
Last sequence update: October 3, 2012
Last modified: April 16, 2014
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)