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I7CDZ3

- I7CDZ3_PSEPT

UniProt

I7CDZ3 - I7CDZ3_PSEPT

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Protein
Submitted name:

ATP-dependent DNA ligase

Gene
T1E_5615
Organism
Pseudomonas putida (strain DOT-T1E)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPPUT1196325:GLIV-5659-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:T1E_5615Imported
OrganismiPseudomonas putida (strain DOT-T1E)Imported
Taxonomic identifieri1196325 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000006503: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I7CDZ3-1 [UniParc]FASTAAdd to Basket

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MAKPLQEYAR KRDFNATPEP SGKRKRGKRA HALQFCIQKH DASHLHYDFR    50
LELDGTLKSW AIPKGPSLDP KVRRLAVHVE DHPLDYADFE GHIPEGHYGA 100
GDVIVWDRGI WEPEGDAHEA YVKGKLRFRL QGEKLAGVWN LFRTHLAGKK 150
EQWMLVKSHD AQARSETEYS IVEALPDSVL SERTLVPRKS AAKKATAPRS 200
SRKRADKVQA APLPAQLQPQ LATLVDSPPS GDWRYEVKFD GYRILARIEG 250
QDIRLFTRNG HDWSSKMPRQ VAALRALGID SAWLDGEMVV ADENGMADFQ 300
ALQNAFDTEH DERITYYLFD LPFLRGQDLR QLPLQHRRDT LRQLLEHNHS 350
DFIKYSADFD EPVESLLDSA CRLKLEGLIG KRADSVYSGR RSPDWIKLKC 400
KQRQEFVIVG YTDPKGSRSG FGALLLALHD NERGELRYAG KVGTGFNTTT 450
LASIHTRLKP LEIACPALPS PPAGAEARGV HWLRPQLLAE VAFAQMTRDG 500
IVRHSVFHGL RDDKAATAID LERAMPAKTV SNRNKQAKAS ENLGELRLTH 550
PDRVIDPTTG VTKREVAEYY AGISQWILPQ LKHRPVALVR APDGLGGELF 600
FQKNAGQLHI PNVLSYEKAE AGQAAMVINR PDTLLGAVQM NTLELHTWNA 650
TDKDFDKPDR FVLDLDPDPA LPWKAMVEAT QLALTLLDEL GLKVFLKTSG 700
GKGIHVVVPL TRRAGWDEVK DFSHAIVNYL AKLFPERLSA VSGPKNRVGR 750
IFIDYLRNGK GATTACAYSL RARDGLPVSV PIWREELAQI KAANQWNITN 800
LHERLAEVDD PWADMGKVRQ SITARMRKQL GLE 833
Length:833
Mass (Da):93,576
Last modified:October 3, 2012 - v1
Checksum:iF6BC5ABCBC366EE5
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003734 Genomic DNA. Translation: AFO51436.1.
RefSeqiYP_006536230.1. NC_018220.1.

Genome annotation databases

EnsemblBacteriaiAFO51436; AFO51436; T1E_5615.
GeneIDi13343222.
KEGGippx:T1E_5615.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003734 Genomic DNA. Translation: AFO51436.1 .
RefSeqi YP_006536230.1. NC_018220.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AFO51436 ; AFO51436 ; T1E_5615 .
GeneIDi 13343222.
KEGGi ppx:T1E_5615.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci PPUT1196325:GLIV-5659-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Metabolic potential of the organic-solvent tolerant Pseudomonas putida DOT-T1E deduced from its annotated genome."
    Udaondo Z., Molina L., Daniels C., Gomez M.J., Molina-Henares M.A., Matilla M.A., Roca A., Fernandez M., Duque E., Segura A., Ramos J.L.
    Microb. Biotechnol. 6:598-611(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DOT-T1E.

Entry informationi

Entry nameiI7CDZ3_PSEPT
AccessioniPrimary (citable) accession number: I7CDZ3
Entry historyi
Integrated into UniProtKB/TrEMBL: October 3, 2012
Last sequence update: October 3, 2012
Last modified: April 16, 2014
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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