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I7CDZ3

- I7CDZ3_PSEPT

UniProt

I7CDZ3 - I7CDZ3_PSEPT

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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

T1E_5615

Organism
Pseudomonas putida (strain DOT-T1E)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPPUT1196325:GLIV-5659-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:T1E_5615Imported
OrganismiPseudomonas putida (strain DOT-T1E)Imported
Taxonomic identifieri1196325 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000006503: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I7CDZ3-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MAKPLQEYAR KRDFNATPEP SGKRKRGKRA HALQFCIQKH DASHLHYDFR
60 70 80 90 100
LELDGTLKSW AIPKGPSLDP KVRRLAVHVE DHPLDYADFE GHIPEGHYGA
110 120 130 140 150
GDVIVWDRGI WEPEGDAHEA YVKGKLRFRL QGEKLAGVWN LFRTHLAGKK
160 170 180 190 200
EQWMLVKSHD AQARSETEYS IVEALPDSVL SERTLVPRKS AAKKATAPRS
210 220 230 240 250
SRKRADKVQA APLPAQLQPQ LATLVDSPPS GDWRYEVKFD GYRILARIEG
260 270 280 290 300
QDIRLFTRNG HDWSSKMPRQ VAALRALGID SAWLDGEMVV ADENGMADFQ
310 320 330 340 350
ALQNAFDTEH DERITYYLFD LPFLRGQDLR QLPLQHRRDT LRQLLEHNHS
360 370 380 390 400
DFIKYSADFD EPVESLLDSA CRLKLEGLIG KRADSVYSGR RSPDWIKLKC
410 420 430 440 450
KQRQEFVIVG YTDPKGSRSG FGALLLALHD NERGELRYAG KVGTGFNTTT
460 470 480 490 500
LASIHTRLKP LEIACPALPS PPAGAEARGV HWLRPQLLAE VAFAQMTRDG
510 520 530 540 550
IVRHSVFHGL RDDKAATAID LERAMPAKTV SNRNKQAKAS ENLGELRLTH
560 570 580 590 600
PDRVIDPTTG VTKREVAEYY AGISQWILPQ LKHRPVALVR APDGLGGELF
610 620 630 640 650
FQKNAGQLHI PNVLSYEKAE AGQAAMVINR PDTLLGAVQM NTLELHTWNA
660 670 680 690 700
TDKDFDKPDR FVLDLDPDPA LPWKAMVEAT QLALTLLDEL GLKVFLKTSG
710 720 730 740 750
GKGIHVVVPL TRRAGWDEVK DFSHAIVNYL AKLFPERLSA VSGPKNRVGR
760 770 780 790 800
IFIDYLRNGK GATTACAYSL RARDGLPVSV PIWREELAQI KAANQWNITN
810 820 830
LHERLAEVDD PWADMGKVRQ SITARMRKQL GLE
Length:833
Mass (Da):93,576
Last modified:October 3, 2012 - v1
Checksum:iF6BC5ABCBC366EE5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003734 Genomic DNA. Translation: AFO51436.1.
RefSeqiYP_006536230.1. NC_018220.1.

Genome annotation databases

EnsemblBacteriaiAFO51436; AFO51436; T1E_5615.
GeneIDi13343222.
KEGGippx:T1E_5615.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003734 Genomic DNA. Translation: AFO51436.1 .
RefSeqi YP_006536230.1. NC_018220.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AFO51436 ; AFO51436 ; T1E_5615 .
GeneIDi 13343222.
KEGGi ppx:T1E_5615.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci PPUT1196325:GLIV-5659-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Metabolic potential of the organic-solvent tolerant Pseudomonas putida DOT-T1E deduced from its annotated genome."
    Udaondo Z., Molina L., Daniels C., Gomez M.J., Molina-Henares M.A., Matilla M.A., Roca A., Fernandez M., Duque E., Segura A., Ramos J.L.
    Microb. Biotechnol. 6:598-611(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DOT-T1EImported.

Entry informationi

Entry nameiI7CDZ3_PSEPT
AccessioniPrimary (citable) accession number: I7CDZ3
Entry historyi
Integrated into UniProtKB/TrEMBL: October 3, 2012
Last sequence update: October 3, 2012
Last modified: October 1, 2014
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3