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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

T1E_1846

Organism
Pseudomonas putida (strain DOT-T1E)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPPUT1196325:GLIV-1862-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:T1E_1846Imported
OrganismiPseudomonas putida (strain DOT-T1E)Imported
Taxonomic identifieri1196325 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000006503: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I7C7K5-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKAFATLFLR LDATTSSNAK LEALRDYFDM APADDAAWAV YFLAGGRPRQ
60 70 80 90 100
LVPTRLLREL ATALAGLPDW LFEESYQAVG DLAETISLLL PLHADGNDEG
110 120 130 140 150
LATWVEQHLL PLRGLAPEQV RQRLPPLWAR LDRASLMLCL KLITGSFRVG
160 170 180 190 200
VSKLLVTRAL AQLAGLDAKR VAQRLVGYTD IGHRPTAASY QRLIAPESAD
210 220 230 240 250
EHNQRGGQPY PFFLAHPLQV SSDQFDTLLG PPSDWQIEWK WDGIRAQVVK
260 270 280 290 300
RDGQLWVWSR GEELVTERFP ELHGLAQTLP DGVVLDGEIL VWKPGETETE
310 320 330 340 350
LAVQPFALLQ QRIGRKTLGK KLLNDAPVVL QAYDLLEWQG DDWRSRPQHE
360 370 380 390 400
RRSQLERLVD EHPLAPVLLS PLLQGPDWAD LARQREQSRS LGVEGLMLKQ
410 420 430 440 450
REALYGVGRT KDMGIWWKWK IDPFSVDAVL IYAQRGHGRR ASLYSDYTFA
460 470 480 490 500
VWDAPAGTPG RALVPFAKAY SGLSDEEMRK VDAIIRKTTV ETFGPVRSVT
510 520 530 540 550
PTLVFELGFE GIALSRRHKS GIAVRFPRML RWRLDKPVEE ADDLATLQAL

LA
Length:552
Mass (Da):62,039
Last modified:October 3, 2012 - v1
Checksum:i227A24B8F9887F8D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003734 Genomic DNA. Translation: AFO47694.1.
RefSeqiYP_006532486.1. NC_018220.1.

Genome annotation databases

EnsemblBacteriaiAFO47694; AFO47694; T1E_1846.
GeneIDi13344129.
KEGGippx:T1E_1846.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003734 Genomic DNA. Translation: AFO47694.1.
RefSeqiYP_006532486.1. NC_018220.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAFO47694; AFO47694; T1E_1846.
GeneIDi13344129.
KEGGippx:T1E_1846.

Phylogenomic databases

KOiK01971.

Enzyme and pathway databases

BioCyciPPUT1196325:GLIV-1862-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Metabolic potential of the organic-solvent tolerant Pseudomonas putida DOT-T1E deduced from its annotated genome."
    Udaondo Z., Molina L., Daniels C., Gomez M.J., Molina-Henares M.A., Matilla M.A., Roca A., Fernandez M., Duque E., Segura A., Ramos J.L.
    Microb. Biotechnol. 6:598-611(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DOT-T1EImported.

Entry informationi

Entry nameiI7C7K5_PSEPT
AccessioniPrimary (citable) accession number: I7C7K5
Entry historyi
Integrated into UniProtKB/TrEMBL: October 3, 2012
Last sequence update: October 3, 2012
Last modified: January 7, 2015
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.