Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

I6ZF88

- I6ZF88_PSEST

UniProt

I6ZF88 - I6ZF88_PSEST

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

ligD

Organism
Pseudomonas stutzeri DSM 10701
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 14 (01 Oct 2014)
      Sequence version 1 (03 Oct 2012)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciPSTU1123519:GLIY-1962-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
    Gene namesi
    Name:ligDImported
    ORF Names:PSJM300_09695Imported
    OrganismiPseudomonas stutzeri DSM 10701Imported
    Taxonomic identifieri1123519 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
    ProteomesiUP000009004: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    I6ZF88-1 [UniParc]FASTAAdd to Basket

    « Hide

    MALDEYNRKR DFSATPEPGG TPAGRRGKQA ALQYCIQKHD ATRLHYDFRL    50
    ELDGTLKSWA IPKGPSLDPK ARRLAVHVED HPLEYATFEG SIPEGHYGAG 100
    DVIVWDRGVW VPQGDPEEGY RKGKLKFALE GEKLSGSWNL VRTRMDGNKE 150
    QWFLIKSNDE TARPEGEYDI VREQPDSVLS DRTLIPRQRG KAKAEAAAKP 200
    AKTPARRRSR KADEPATTLS GARPAPLPES LKPQLATLVE SVPDGDWRYE 250
    IKFDGYRILA RIESGEVRLF TRNGHDWTAK MPQQAKALAA LGLESAWLDG 300
    EVVVPNEEGT PDFQALQNAF EAGRSGRIVF YLFDLPYLNG MDLREVPLEE 350
    RRTALRQVLE AVPSDLLRFS ADFTEQPDSI LESACQMKLE GLIGKRAGSS 400
    YVSRRSSSWV KIKCKNRQEF VIVGFTDPKG ARSGFGALLL GLHDEQGELR 450
    YAGKVGTGFN QATLKSLHAK LEPLVVKRCP LDKPPPAAEV RGAHWLKPEL 500
    ICEVAYAEMT RQGVVRHSVF HGLRADKPAR AITHERPVST PAKKSDAIRI 550
    SNPERIIDQS IGATKMELAR FYAEIAPWAL PHLRHRPLAL VRAPEGIEGE 600
    LFFQKHTEKL SIPHITQLDR ALYPEHAALM TIDSVEALIG AAQMGTIELH 650
    TWNALAPELD HPDRFVLDLD PDPALPWKRM VEATQLTQTL LDEIGLQSFL 700
    KTSGGKGLHI LVPLQPVHDW SEVKGFSQAI ARYLAKLLPQ HFSAVSGPKN 750
    RIGRIFIDYL RNSQGASTVA AYSVRAREGL PVSVPIHRDE LAELKGANLW 800
    NIRNLMLRLE EQGDDDPWSG IDQTGQRITA DMRERLGLKP 840
    Length:840
    Mass (Da):93,786
    Last modified:October 3, 2012 - v1
    Checksum:iD59A7095BC724EDD
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003725 Genomic DNA. Translation: AFN78005.1.
    RefSeqiWP_014852812.1. NC_018177.1.
    YP_006524363.1. NC_018177.1.

    Genome annotation databases

    EnsemblBacteriaiAFN78005; AFN78005; PSJM300_09695.
    GeneIDi13328655.
    KEGGipsj:PSJM300_09695.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003725 Genomic DNA. Translation: AFN78005.1 .
    RefSeqi WP_014852812.1. NC_018177.1.
    YP_006524363.1. NC_018177.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AFN78005 ; AFN78005 ; PSJM300_09695 .
    GeneIDi 13328655.
    KEGGi psj:PSJM300_09695.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci PSTU1123519:GLIY-1962-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome Sequence of Pseudomonas stutzeri Strain JM300 (DSM 10701), a Soil Isolate and Model Organism for Natural Transformation."
      Busquets A., Pena A., Gomila M., Bosch R., Nogales B., Garcia-Valdes E., Lalucat J., Bennasar A.
      J. Bacteriol. 194:5477-5478(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 10701Imported.

    Entry informationi

    Entry nameiI6ZF88_PSEST
    AccessioniPrimary (citable) accession number: I6ZF88
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 3, 2012
    Last sequence update: October 3, 2012
    Last modified: October 1, 2014
    This is version 14 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3