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I6ZF88

- I6ZF88_PSEST

UniProt

I6ZF88 - I6ZF88_PSEST

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Protein
Submitted name: ATP-dependent DNA ligase
Gene
ligD, PSJM300_09695
Organism
Pseudomonas stutzeri DSM 10701
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC
  3. DNA primase activity Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPSTU1123519:GLIY-1962-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Name:ligDImported
ORF Names:PSJM300_09695Imported
OrganismiPseudomonas stutzeri DSM 10701Imported
Taxonomic identifieri1123519 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000009004: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I6ZF88-1 [UniParc]FASTAAdd to Basket

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MALDEYNRKR DFSATPEPGG TPAGRRGKQA ALQYCIQKHD ATRLHYDFRL    50
ELDGTLKSWA IPKGPSLDPK ARRLAVHVED HPLEYATFEG SIPEGHYGAG 100
DVIVWDRGVW VPQGDPEEGY RKGKLKFALE GEKLSGSWNL VRTRMDGNKE 150
QWFLIKSNDE TARPEGEYDI VREQPDSVLS DRTLIPRQRG KAKAEAAAKP 200
AKTPARRRSR KADEPATTLS GARPAPLPES LKPQLATLVE SVPDGDWRYE 250
IKFDGYRILA RIESGEVRLF TRNGHDWTAK MPQQAKALAA LGLESAWLDG 300
EVVVPNEEGT PDFQALQNAF EAGRSGRIVF YLFDLPYLNG MDLREVPLEE 350
RRTALRQVLE AVPSDLLRFS ADFTEQPDSI LESACQMKLE GLIGKRAGSS 400
YVSRRSSSWV KIKCKNRQEF VIVGFTDPKG ARSGFGALLL GLHDEQGELR 450
YAGKVGTGFN QATLKSLHAK LEPLVVKRCP LDKPPPAAEV RGAHWLKPEL 500
ICEVAYAEMT RQGVVRHSVF HGLRADKPAR AITHERPVST PAKKSDAIRI 550
SNPERIIDQS IGATKMELAR FYAEIAPWAL PHLRHRPLAL VRAPEGIEGE 600
LFFQKHTEKL SIPHITQLDR ALYPEHAALM TIDSVEALIG AAQMGTIELH 650
TWNALAPELD HPDRFVLDLD PDPALPWKRM VEATQLTQTL LDEIGLQSFL 700
KTSGGKGLHI LVPLQPVHDW SEVKGFSQAI ARYLAKLLPQ HFSAVSGPKN 750
RIGRIFIDYL RNSQGASTVA AYSVRAREGL PVSVPIHRDE LAELKGANLW 800
NIRNLMLRLE EQGDDDPWSG IDQTGQRITA DMRERLGLKP 840
Length:840
Mass (Da):93,786
Last modified:October 3, 2012 - v1
Checksum:iD59A7095BC724EDD
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003725 Genomic DNA. Translation: AFN78005.1.
RefSeqiWP_014852812.1. NC_018177.1.
YP_006524363.1. NC_018177.1.

Genome annotation databases

EnsemblBacteriaiAFN78005; AFN78005; PSJM300_09695.
GeneIDi13328655.
KEGGipsj:PSJM300_09695.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003725 Genomic DNA. Translation: AFN78005.1 .
RefSeqi WP_014852812.1. NC_018177.1.
YP_006524363.1. NC_018177.1.

3D structure databases

ModBasei Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AFN78005 ; AFN78005 ; PSJM300_09695 .
GeneIDi 13328655.
KEGGi psj:PSJM300_09695.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci PSTU1123519:GLIY-1962-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genome Sequence of Pseudomonas stutzeri Strain JM300 (DSM 10701), a Soil Isolate and Model Organism for Natural Transformation."
    Busquets A., Pena A., Gomila M., Bosch R., Nogales B., Garcia-Valdes E., Lalucat J., Bennasar A.
    J. Bacteriol. 194:5477-5478(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 10701Imported.

Entry informationi

Entry nameiI6ZF88_PSEST
AccessioniPrimary (citable) accession number: I6ZF88
Entry historyi
Integrated into UniProtKB/TrEMBL: October 3, 2012
Last sequence update: October 3, 2012
Last modified: September 3, 2014
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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