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I6ZF88 (I6ZF88_PSEST) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 7. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
ATP-dependent DNA ligase EMBL AFN78005.1
EC=6.5.1.1 EMBL AFN78005.1
Gene names
Name:ligD EMBL AFN78005.1
ORF Names:PSJM300_09695 EMBL AFN78005.1
OrganismPseudomonas stutzeri DSM 10701 EMBL AFN78005.1
Taxonomic identifier1123519 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas ›

Protein attributes

Sequence length840 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
I6ZF88 [UniParc].

Last modified October 3, 2012. Version 1.
Checksum: D59A7095BC724EDD

FASTA84093,786
        10         20         30         40         50         60 
MALDEYNRKR DFSATPEPGG TPAGRRGKQA ALQYCIQKHD ATRLHYDFRL ELDGTLKSWA 

        70         80         90        100        110        120 
IPKGPSLDPK ARRLAVHVED HPLEYATFEG SIPEGHYGAG DVIVWDRGVW VPQGDPEEGY 

       130        140        150        160        170        180 
RKGKLKFALE GEKLSGSWNL VRTRMDGNKE QWFLIKSNDE TARPEGEYDI VREQPDSVLS 

       190        200        210        220        230        240 
DRTLIPRQRG KAKAEAAAKP AKTPARRRSR KADEPATTLS GARPAPLPES LKPQLATLVE 

       250        260        270        280        290        300 
SVPDGDWRYE IKFDGYRILA RIESGEVRLF TRNGHDWTAK MPQQAKALAA LGLESAWLDG 

       310        320        330        340        350        360 
EVVVPNEEGT PDFQALQNAF EAGRSGRIVF YLFDLPYLNG MDLREVPLEE RRTALRQVLE 

       370        380        390        400        410        420 
AVPSDLLRFS ADFTEQPDSI LESACQMKLE GLIGKRAGSS YVSRRSSSWV KIKCKNRQEF 

       430        440        450        460        470        480 
VIVGFTDPKG ARSGFGALLL GLHDEQGELR YAGKVGTGFN QATLKSLHAK LEPLVVKRCP 

       490        500        510        520        530        540 
LDKPPPAAEV RGAHWLKPEL ICEVAYAEMT RQGVVRHSVF HGLRADKPAR AITHERPVST 

       550        560        570        580        590        600 
PAKKSDAIRI SNPERIIDQS IGATKMELAR FYAEIAPWAL PHLRHRPLAL VRAPEGIEGE 

       610        620        630        640        650        660 
LFFQKHTEKL SIPHITQLDR ALYPEHAALM TIDSVEALIG AAQMGTIELH TWNALAPELD 

       670        680        690        700        710        720 
HPDRFVLDLD PDPALPWKRM VEATQLTQTL LDEIGLQSFL KTSGGKGLHI LVPLQPVHDW 

       730        740        750        760        770        780 
SEVKGFSQAI ARYLAKLLPQ HFSAVSGPKN RIGRIFIDYL RNSQGASTVA AYSVRAREGL 

       790        800        810        820        830        840 
PVSVPIHRDE LAELKGANLW NIRNLMLRLE EQGDDDPWSG IDQTGQRITA DMRERLGLKP

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References

[1]"Genome Sequence of Pseudomonas stutzeri Strain JM300 (DSM 10701), a Soil Isolate and Model Organism for Natural Transformation."
Busquets A., Pena A., Gomila M., Bosch R., Nogales B., Garcia-Valdes E., Lalucat J., Bennasar A.
J. Bacteriol. 194:5477-5478(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: DSM 10701 EMBL AFN78005.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP003725 Genomic DNA. Translation: AFN78005.1.
RefSeqYP_006524363.1. NC_018177.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFN78005; AFN78005; PSJM300_09695.
GeneID13328655.
KEGGpsj:PSJM300_09695.

Phylogenomic databases

KOK01971.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameI6ZF88_PSEST
AccessionPrimary (citable) accession number: I6ZF88
Entry history
Integrated into UniProtKB/TrEMBL: October 3, 2012
Last sequence update: October 3, 2012
Last modified: April 3, 2013
This is version 7 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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