Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

DNA polymerase LigD, ligase domain protein

Gene

MODMU_2075

Organism
Modestobacter marinus (strain BC501)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMMAR477641:GLGK-2073-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD, ligase domain proteinImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:MODMU_2075Imported
OrganismiModestobacter marinus (strain BC501)Imported
Taxonomic identifieri1144889 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesFrankineaeGeodermatophilaceaeModestobacter
ProteomesiUP000006461: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I4EVU7-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAPPDPLATY RAKRDPARTA EPVPAADQPL PVGDDDTFVV QEHHTPRGRT
60 70 80 90 100
GQRVHWDLRL ERDGVLKSWA VPKGPPTEPG VNRLAVPTED HPLEYASFAG
110 120 130 140 150
TITAGEYGGG QVSIWDAGRY ATEKWADDHV TVSFDGRRLS GRYVVFRLPD
160 170 180 190 200
GTWNVRKLDA DPVVDAPVAA GVPEDLTPML AAIGELPRAD DPRWGYEFKW
210 220 230 240 250
DGVRALAHVR GGRVRLRARS GNDVTATYPE LHRLPEVLSG HDAVVDGEVV
260 270 280 290 300
ALDGRGRPDF GLLQGRMHRT GPEVARMAAA APVTYLVFDL LALDGENLLG
310 320 330 340 350
LPYTERRERL DALGLASDRW VTTPWFRGNG EQVQAASLEN GLEGVVAKRL
360 370 380 390 400
DSVYRPGGRG PDWRKVKNLR TQSVVVGGWR PGEGRRAGGI GSLLVGVHDD
410 420 430 440 450
TGRLVFAGHV GTGFTARALA DLAPLLTPRA TPPFADALPR EVTRDARWVE
460 470 480
PLLVGEVRYG EWTREGRLRH PAWRGLRDDV AAADVVVEP
Length:489
Mass (Da):53,431
Last modified:September 5, 2012 - v1
Checksum:i94DF9B804D3AF243
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO203431 Genomic DNA. Translation: CCH87510.1.
RefSeqiYP_006365997.1. NC_017955.1.

Genome annotation databases

EnsemblBacteriaiCCH87510; CCH87510; MODMU_2075.
GeneIDi13010723.
KEGGimmar:MODMU_2075.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO203431 Genomic DNA. Translation: CCH87510.1.
RefSeqiYP_006365997.1. NC_017955.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCCH87510; CCH87510; MODMU_2075.
GeneIDi13010723.
KEGGimmar:MODMU_2075.

Phylogenomic databases

KOiK01971.

Enzyme and pathway databases

BioCyciMMAR477641:GLGK-2073-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of radiation-resistant Modestobacter marinus strain BC501, a representative Actinobacterium that thrives on calcareous stone surfaces."
    Normand P., Gury J., Pujic P., Chouaia B., Crotti E., Brusetti L., Daffonchio D., Vacherie B., Barbe V., Medigue C., Calteau A., Ghodhbane-Gtari F., Essoussi I., Nouioui I., Abbassi-Ghozzi I., Gtari M.
    J. Bacteriol. 194:4773-4774(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BC501Imported.

Entry informationi

Entry nameiI4EVU7_MODMB
AccessioniPrimary (citable) accession number: I4EVU7
Entry historyi
Integrated into UniProtKB/TrEMBL: September 5, 2012
Last sequence update: September 5, 2012
Last modified: January 7, 2015
This is version 11 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.