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I4CT52

- I4CT52_PSEST

UniProt

I4CT52 - I4CT52_PSEST

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Protein
Submitted name: ATP-dependent DNA ligase
Gene
ligD, A458_10100
Organism
Pseudomonas stutzeri CCUG 29243
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC
  3. DNA primase activity Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPSTU1196835:GLIX-2023-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Name:ligDImported
ORF Names:A458_10100Imported
OrganismiPseudomonas stutzeri CCUG 29243Imported
Taxonomic identifieri1196835 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000006063: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I4CT52-1 [UniParc]FASTAAdd to Basket

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MALDEYQRMR DFAATPEPSG KARGRSRKVQ SLQYCIQKHD ATRLHYDFRL    50
ELDGTLKSWA IPKGPSLDPS VRRLAVHVED HPLEYATFEG SIPAGHYGAG 100
DVIVWDRGVW IPQGDPQEGY RKGKLKFSLE GEKLAGSWNL VRTHMAGKKE 150
QWFLIKSHDE AAREEGEYDV VTAEPNSVLS DRTLVPRKRG AAKARVAEAP 200
AKPVKAPARK RASRKKSDAV KLEGAVPAKL PETFKPQLAT LVDAVPSGDW 250
RYEIKFDGYR MLARIDAGKV ALFTRNGHDW TAKMPQQAAA LAGLGLESGW 300
LDGEVVVPNE EGAPDFQALQ NAFEAGRSGS ILYYLFDVPY LNGMDLRDVP 350
LEQRRAALRE VLEGSDSELL RFSDDFTEQP DSILESACQM KLEGLIGKRA 400
GSSYTSRRSS SWVKIKCSNR QEFIIVGYTE PKGTRTGFGA LLLGLHDDSG 450
KLLYAGKVGT GFNQATLKSL HKQLKKLEAD KSPLAKAAPA ADVRGAQWLK 500
PELMCEAAYA EMTRQGVVRH SVFHGLRSDK PADAITRERA KPASRSSKAE 550
QRQTDPIGSG RIKISSPERI IDPSSGITKI EVARFYAQIA PWALPQLRAR 600
PLALVRAPEG ITGELFFQKH ADKLAIPHIT QLDPALDPKH GALLVIDSAE 650
ALVGAAQMGT IELHCWNAVA PELEHPDRFV LDLDPDPALP WKSMLEATQL 700
TQTLLDEIGL TSFLKTSGGK GIHIVVPLDP VHGWSEVKAF SQAIAKYLAK 750
LLPSHFSAVS GPKNRVGRIF IDYLRNSRGA STVAPYSVRA REGLPVSVPI 800
HREELADLKG ANLWTVRNLL ERLQELGDDD PWADMTRVRQ TITAQMRERL 850
AMPA 854
Length:854
Mass (Da):94,282
Last modified:September 5, 2012 - v1
Checksum:i955E0EF9430866FF
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003677 Genomic DNA. Translation: AFM33259.1.
RefSeqiWP_014820221.1. NC_018028.1.
YP_006457682.1. NC_018028.1.

Genome annotation databases

EnsemblBacteriaiAFM33259; AFM33259; A458_10100.
GeneIDi13148287.
KEGGipsc:A458_10100.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003677 Genomic DNA. Translation: AFM33259.1 .
RefSeqi WP_014820221.1. NC_018028.1.
YP_006457682.1. NC_018028.1.

3D structure databases

ModBasei Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AFM33259 ; AFM33259 ; A458_10100 .
GeneIDi 13148287.
KEGGi psc:A458_10100.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci PSTU1196835:GLIX-2023-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete Genome Sequence of the Naphthalene-Degrading Bacterium Pseudomonas stutzeri AN10 (CCUG 29243)."
    Brunet-Galmes I., Busquets A., Pena A., Gomila M., Nogales B., Garcia-Valdes E., Lalucat J., Bennasar A., Bosch R.
    J. Bacteriol. 194:6642-6643(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CCUG 29243Imported.

Entry informationi

Entry nameiI4CT52_PSEST
AccessioniPrimary (citable) accession number: I4CT52
Entry historyi
Integrated into UniProtKB/TrEMBL: September 5, 2012
Last sequence update: September 5, 2012
Last modified: September 3, 2014
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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