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I4CT52

- I4CT52_PSEST

UniProt

I4CT52 - I4CT52_PSEST

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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

ligD

Organism
Pseudomonas stutzeri CCUG 29243
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPSTU1196835:GLIX-2023-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Name:ligDImported
ORF Names:A458_10100Imported
OrganismiPseudomonas stutzeri CCUG 29243Imported
Taxonomic identifieri1196835 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000006063: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I4CT52-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MALDEYQRMR DFAATPEPSG KARGRSRKVQ SLQYCIQKHD ATRLHYDFRL
60 70 80 90 100
ELDGTLKSWA IPKGPSLDPS VRRLAVHVED HPLEYATFEG SIPAGHYGAG
110 120 130 140 150
DVIVWDRGVW IPQGDPQEGY RKGKLKFSLE GEKLAGSWNL VRTHMAGKKE
160 170 180 190 200
QWFLIKSHDE AAREEGEYDV VTAEPNSVLS DRTLVPRKRG AAKARVAEAP
210 220 230 240 250
AKPVKAPARK RASRKKSDAV KLEGAVPAKL PETFKPQLAT LVDAVPSGDW
260 270 280 290 300
RYEIKFDGYR MLARIDAGKV ALFTRNGHDW TAKMPQQAAA LAGLGLESGW
310 320 330 340 350
LDGEVVVPNE EGAPDFQALQ NAFEAGRSGS ILYYLFDVPY LNGMDLRDVP
360 370 380 390 400
LEQRRAALRE VLEGSDSELL RFSDDFTEQP DSILESACQM KLEGLIGKRA
410 420 430 440 450
GSSYTSRRSS SWVKIKCSNR QEFIIVGYTE PKGTRTGFGA LLLGLHDDSG
460 470 480 490 500
KLLYAGKVGT GFNQATLKSL HKQLKKLEAD KSPLAKAAPA ADVRGAQWLK
510 520 530 540 550
PELMCEAAYA EMTRQGVVRH SVFHGLRSDK PADAITRERA KPASRSSKAE
560 570 580 590 600
QRQTDPIGSG RIKISSPERI IDPSSGITKI EVARFYAQIA PWALPQLRAR
610 620 630 640 650
PLALVRAPEG ITGELFFQKH ADKLAIPHIT QLDPALDPKH GALLVIDSAE
660 670 680 690 700
ALVGAAQMGT IELHCWNAVA PELEHPDRFV LDLDPDPALP WKSMLEATQL
710 720 730 740 750
TQTLLDEIGL TSFLKTSGGK GIHIVVPLDP VHGWSEVKAF SQAIAKYLAK
760 770 780 790 800
LLPSHFSAVS GPKNRVGRIF IDYLRNSRGA STVAPYSVRA REGLPVSVPI
810 820 830 840 850
HREELADLKG ANLWTVRNLL ERLQELGDDD PWADMTRVRQ TITAQMRERL

AMPA
Length:854
Mass (Da):94,282
Last modified:September 5, 2012 - v1
Checksum:i955E0EF9430866FF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003677 Genomic DNA. Translation: AFM33259.1.
RefSeqiYP_006457682.1. NC_018028.1.

Genome annotation databases

EnsemblBacteriaiAFM33259; AFM33259; A458_10100.
GeneIDi13148287.
KEGGipsc:A458_10100.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003677 Genomic DNA. Translation: AFM33259.1 .
RefSeqi YP_006457682.1. NC_018028.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AFM33259 ; AFM33259 ; A458_10100 .
GeneIDi 13148287.
KEGGi psc:A458_10100.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci PSTU1196835:GLIX-2023-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete Genome Sequence of the Naphthalene-Degrading Bacterium Pseudomonas stutzeri AN10 (CCUG 29243)."
    Brunet-Galmes I., Busquets A., Pena A., Gomila M., Nogales B., Garcia-Valdes E., Lalucat J., Bennasar A., Bosch R.
    J. Bacteriol. 194:6642-6643(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CCUG 29243Imported.

Entry informationi

Entry nameiI4CT52_PSEST
AccessioniPrimary (citable) accession number: I4CT52
Entry historyi
Integrated into UniProtKB/TrEMBL: September 5, 2012
Last sequence update: September 5, 2012
Last modified: October 29, 2014
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3