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I4CT52

- I4CT52_PSEST

UniProt

I4CT52 - I4CT52_PSEST

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

ligD

Organism
Pseudomonas stutzeri CCUG 29243
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 15 (01 Oct 2014)
      Sequence version 1 (05 Sep 2012)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciPSTU1196835:GLIX-2023-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
    Gene namesi
    Name:ligDImported
    ORF Names:A458_10100Imported
    OrganismiPseudomonas stutzeri CCUG 29243Imported
    Taxonomic identifieri1196835 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
    ProteomesiUP000006063: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    I4CT52-1 [UniParc]FASTAAdd to Basket

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    MALDEYQRMR DFAATPEPSG KARGRSRKVQ SLQYCIQKHD ATRLHYDFRL    50
    ELDGTLKSWA IPKGPSLDPS VRRLAVHVED HPLEYATFEG SIPAGHYGAG 100
    DVIVWDRGVW IPQGDPQEGY RKGKLKFSLE GEKLAGSWNL VRTHMAGKKE 150
    QWFLIKSHDE AAREEGEYDV VTAEPNSVLS DRTLVPRKRG AAKARVAEAP 200
    AKPVKAPARK RASRKKSDAV KLEGAVPAKL PETFKPQLAT LVDAVPSGDW 250
    RYEIKFDGYR MLARIDAGKV ALFTRNGHDW TAKMPQQAAA LAGLGLESGW 300
    LDGEVVVPNE EGAPDFQALQ NAFEAGRSGS ILYYLFDVPY LNGMDLRDVP 350
    LEQRRAALRE VLEGSDSELL RFSDDFTEQP DSILESACQM KLEGLIGKRA 400
    GSSYTSRRSS SWVKIKCSNR QEFIIVGYTE PKGTRTGFGA LLLGLHDDSG 450
    KLLYAGKVGT GFNQATLKSL HKQLKKLEAD KSPLAKAAPA ADVRGAQWLK 500
    PELMCEAAYA EMTRQGVVRH SVFHGLRSDK PADAITRERA KPASRSSKAE 550
    QRQTDPIGSG RIKISSPERI IDPSSGITKI EVARFYAQIA PWALPQLRAR 600
    PLALVRAPEG ITGELFFQKH ADKLAIPHIT QLDPALDPKH GALLVIDSAE 650
    ALVGAAQMGT IELHCWNAVA PELEHPDRFV LDLDPDPALP WKSMLEATQL 700
    TQTLLDEIGL TSFLKTSGGK GIHIVVPLDP VHGWSEVKAF SQAIAKYLAK 750
    LLPSHFSAVS GPKNRVGRIF IDYLRNSRGA STVAPYSVRA REGLPVSVPI 800
    HREELADLKG ANLWTVRNLL ERLQELGDDD PWADMTRVRQ TITAQMRERL 850
    AMPA 854
    Length:854
    Mass (Da):94,282
    Last modified:September 5, 2012 - v1
    Checksum:i955E0EF9430866FF
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003677 Genomic DNA. Translation: AFM33259.1.
    RefSeqiWP_014820221.1. NC_018028.1.
    YP_006457682.1. NC_018028.1.

    Genome annotation databases

    EnsemblBacteriaiAFM33259; AFM33259; A458_10100.
    GeneIDi13148287.
    KEGGipsc:A458_10100.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003677 Genomic DNA. Translation: AFM33259.1 .
    RefSeqi WP_014820221.1. NC_018028.1.
    YP_006457682.1. NC_018028.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AFM33259 ; AFM33259 ; A458_10100 .
    GeneIDi 13148287.
    KEGGi psc:A458_10100.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci PSTU1196835:GLIX-2023-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete Genome Sequence of the Naphthalene-Degrading Bacterium Pseudomonas stutzeri AN10 (CCUG 29243)."
      Brunet-Galmes I., Busquets A., Pena A., Gomila M., Nogales B., Garcia-Valdes E., Lalucat J., Bennasar A., Bosch R.
      J. Bacteriol. 194:6642-6643(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: CCUG 29243Imported.

    Entry informationi

    Entry nameiI4CT52_PSEST
    AccessioniPrimary (citable) accession number: I4CT52
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 5, 2012
    Last sequence update: September 5, 2012
    Last modified: October 1, 2014
    This is version 15 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3