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I4BNZ8

- I4BNZ8_MYCCN

UniProt

I4BNZ8 - I4BNZ8_MYCCN

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Protein
Submitted name:

DNA ligase D/DNA polymerase LigD

Gene

Mycch_4291

Organism
Mycobacterium chubuense (strain NBB4)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMCHU710421:GLGL-4287-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase D/DNA polymerase LigDImported
Gene namesi
Ordered Locus Names:Mycch_4291Imported
OrganismiMycobacterium chubuense (strain NBB4)Imported
Taxonomic identifieri710421 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacterium
ProteomesiUP000006057: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I4BNZ8-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MKLTNADKVL YPATGTTKGD VFEYYVRVAE AMLPHIAGRP VTRKRWPNGV
60 70 80 90 100
EEGSFFEKQL ASSAPEWLDR GTIVHKSGTT TYPVIDTAEG LAWIAQQASL
110 120 130 140 150
EVHVPQWRFD DTGSVGPATR IVFDLDPGEG VSMRQLCEVA HEVRDLITDI
160 170 180 190 200
GLQTFPLTSG SKGLHLYVPL QDPISSRGAS VLAKRVAQQL EQTMPKRVTA
210 220 230 240 250
TMTRSLRDGK VFLDWSQNNG NKTTIAPYSL RGREHPTVAA PRTWEEIEDP
260 270 280 290 300
KLRHLTYDEV LDRLERDGDL LAELDDPLPV PDRLTTYRSM RDTARTPEPV
310 320 330 340 350
PKQSPEVGNN DKFVIQEHHA RRLHYDFRLE RDGVLVSWAV PKNLPETPSV
360 370 380 390 400
NHLAVHTEDH PMEYLTFAGE IPKGEYGGGQ VYVWDTGTYE TEKFRDNPPD
410 420 430 440 450
GPAKGGEVIV TLHGEKVEGR YALIQTDGKN WLAHRMKDQK HPTFADLVPM
460 470 480 490 500
LTTEGSVERL SKGQWAFEGK WDGYRILVEA DHGKLTVRSR RGRDVTAEYP
510 520 530 540 550
QFQAIAADLA DHHVILDGEA VALDESGVPS FREMQNRARS TRVEFWAFDI
560 570 580 590 600
LYLDGRSLMR AKYTDRRRVL ETLAEGGGLI VPAAIEGDGP QALAYAEKKR
610 620 630 640 650
WEGVVAKKKD STYQAGRRSS SWIKDKLWNT QEVVIGGWRQ GNGGRTSGIG
660 670 680 690 700
ALMLGIPGEG GLQFVGRVGT GFTEKELASL KETLTPLRSD ESPFSARLPT
710 720 730 740
QDAKGVTFVR PELVGEVRYS ERTGDGRLRQ PSWRGLRPDK GPGEVRWE
Length:748
Mass (Da):83,640
Last modified:September 5, 2012 - v1
Checksum:i99E441ECF7237B50
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003053 Genomic DNA. Translation: AFM19005.1.
RefSeqiWP_014817475.1. NC_018027.1.
YP_006454684.1. NC_018027.1.

Genome annotation databases

EnsemblBacteriaiAFM19005; AFM19005; Mycch_4291.
GeneIDi13143453.
KEGGimcb:Mycch_4291.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003053 Genomic DNA. Translation: AFM19005.1 .
RefSeqi WP_014817475.1. NC_018027.1.
YP_006454684.1. NC_018027.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AFM19005 ; AFM19005 ; Mycch_4291 .
GeneIDi 13143453.
KEGGi mcb:Mycch_4291.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci MCHU710421:GLGL-4287-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of chromosome of Mycobacterium chubuense NBB4."
    US DOE Joint Genome Institute
    Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Mikhailova N., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Mattes T.
    , Holmes A., Rutledge P., Paulsen I., Coleman N., Woyke T.
    Submitted (JUN-2012) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NBB4Imported.

Entry informationi

Entry nameiI4BNZ8_MYCCN
AccessioniPrimary (citable) accession number: I4BNZ8
Entry historyi
Integrated into UniProtKB/TrEMBL: September 5, 2012
Last sequence update: September 5, 2012
Last modified: October 29, 2014
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3