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I4BNZ8

- I4BNZ8_MYCCN

UniProt

I4BNZ8 - I4BNZ8_MYCCN

Protein
Submitted name:

DNA ligase D/DNA polymerase LigD

Gene

Mycch_4291

Organism
Mycobacterium chubuense (strain NBB4)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 12 (01 Oct 2014)
      Sequence version 1 (05 Sep 2012)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciMCHU710421:GLGL-4287-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase D/DNA polymerase LigDImported
    Gene namesi
    Ordered Locus Names:Mycch_4291Imported
    OrganismiMycobacterium chubuense (strain NBB4)Imported
    Taxonomic identifieri710421 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacterium
    ProteomesiUP000006057: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    I4BNZ8-1 [UniParc]FASTAAdd to Basket

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    MKLTNADKVL YPATGTTKGD VFEYYVRVAE AMLPHIAGRP VTRKRWPNGV    50
    EEGSFFEKQL ASSAPEWLDR GTIVHKSGTT TYPVIDTAEG LAWIAQQASL 100
    EVHVPQWRFD DTGSVGPATR IVFDLDPGEG VSMRQLCEVA HEVRDLITDI 150
    GLQTFPLTSG SKGLHLYVPL QDPISSRGAS VLAKRVAQQL EQTMPKRVTA 200
    TMTRSLRDGK VFLDWSQNNG NKTTIAPYSL RGREHPTVAA PRTWEEIEDP 250
    KLRHLTYDEV LDRLERDGDL LAELDDPLPV PDRLTTYRSM RDTARTPEPV 300
    PKQSPEVGNN DKFVIQEHHA RRLHYDFRLE RDGVLVSWAV PKNLPETPSV 350
    NHLAVHTEDH PMEYLTFAGE IPKGEYGGGQ VYVWDTGTYE TEKFRDNPPD 400
    GPAKGGEVIV TLHGEKVEGR YALIQTDGKN WLAHRMKDQK HPTFADLVPM 450
    LTTEGSVERL SKGQWAFEGK WDGYRILVEA DHGKLTVRSR RGRDVTAEYP 500
    QFQAIAADLA DHHVILDGEA VALDESGVPS FREMQNRARS TRVEFWAFDI 550
    LYLDGRSLMR AKYTDRRRVL ETLAEGGGLI VPAAIEGDGP QALAYAEKKR 600
    WEGVVAKKKD STYQAGRRSS SWIKDKLWNT QEVVIGGWRQ GNGGRTSGIG 650
    ALMLGIPGEG GLQFVGRVGT GFTEKELASL KETLTPLRSD ESPFSARLPT 700
    QDAKGVTFVR PELVGEVRYS ERTGDGRLRQ PSWRGLRPDK GPGEVRWE 748
    Length:748
    Mass (Da):83,640
    Last modified:September 5, 2012 - v1
    Checksum:i99E441ECF7237B50
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003053 Genomic DNA. Translation: AFM19005.1.
    RefSeqiYP_006454684.1. NC_018027.1.

    Genome annotation databases

    EnsemblBacteriaiAFM19005; AFM19005; Mycch_4291.
    GeneIDi13143453.
    KEGGimcb:Mycch_4291.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003053 Genomic DNA. Translation: AFM19005.1 .
    RefSeqi YP_006454684.1. NC_018027.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AFM19005 ; AFM19005 ; Mycch_4291 .
    GeneIDi 13143453.
    KEGGi mcb:Mycch_4291.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci MCHU710421:GLGL-4287-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of chromosome of Mycobacterium chubuense NBB4."
      US DOE Joint Genome Institute
      Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Mikhailova N., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Mattes T.
      , Holmes A., Rutledge P., Paulsen I., Coleman N., Woyke T.
      Submitted (JUN-2012) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NBB4Imported.

    Entry informationi

    Entry nameiI4BNZ8_MYCCN
    AccessioniPrimary (citable) accession number: I4BNZ8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 5, 2012
    Last sequence update: September 5, 2012
    Last modified: October 1, 2014
    This is version 12 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3