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I4BNZ8 (I4BNZ8_MYCCN) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 7. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
DNA ligase D/DNA polymerase LigD EMBL AFM19005.1
Gene names
Ordered Locus Names:Mycch_4291 EMBL AFM19005.1
OrganismMycobacterium chubuense (strain NBB4) [Complete proteome] [HAMAP] EMBL AFM19005.1
Taxonomic identifier710421 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Mycobacteriaceae › Mycobacterium ›

Protein attributes

Sequence length748 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AFM19005.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

DNA primase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
I4BNZ8 [UniParc].

Last modified September 5, 2012. Version 1.
Checksum: 99E441ECF7237B50

FASTA74883,640
        10         20         30         40         50         60 
MKLTNADKVL YPATGTTKGD VFEYYVRVAE AMLPHIAGRP VTRKRWPNGV EEGSFFEKQL 

        70         80         90        100        110        120 
ASSAPEWLDR GTIVHKSGTT TYPVIDTAEG LAWIAQQASL EVHVPQWRFD DTGSVGPATR 

       130        140        150        160        170        180 
IVFDLDPGEG VSMRQLCEVA HEVRDLITDI GLQTFPLTSG SKGLHLYVPL QDPISSRGAS 

       190        200        210        220        230        240 
VLAKRVAQQL EQTMPKRVTA TMTRSLRDGK VFLDWSQNNG NKTTIAPYSL RGREHPTVAA 

       250        260        270        280        290        300 
PRTWEEIEDP KLRHLTYDEV LDRLERDGDL LAELDDPLPV PDRLTTYRSM RDTARTPEPV 

       310        320        330        340        350        360 
PKQSPEVGNN DKFVIQEHHA RRLHYDFRLE RDGVLVSWAV PKNLPETPSV NHLAVHTEDH 

       370        380        390        400        410        420 
PMEYLTFAGE IPKGEYGGGQ VYVWDTGTYE TEKFRDNPPD GPAKGGEVIV TLHGEKVEGR 

       430        440        450        460        470        480 
YALIQTDGKN WLAHRMKDQK HPTFADLVPM LTTEGSVERL SKGQWAFEGK WDGYRILVEA 

       490        500        510        520        530        540 
DHGKLTVRSR RGRDVTAEYP QFQAIAADLA DHHVILDGEA VALDESGVPS FREMQNRARS 

       550        560        570        580        590        600 
TRVEFWAFDI LYLDGRSLMR AKYTDRRRVL ETLAEGGGLI VPAAIEGDGP QALAYAEKKR 

       610        620        630        640        650        660 
WEGVVAKKKD STYQAGRRSS SWIKDKLWNT QEVVIGGWRQ GNGGRTSGIG ALMLGIPGEG 

       670        680        690        700        710        720 
GLQFVGRVGT GFTEKELASL KETLTPLRSD ESPFSARLPT QDAKGVTFVR PELVGEVRYS 

       730        740 
ERTGDGRLRQ PSWRGLRPDK GPGEVRWE

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References

[1]"Complete sequence of chromosome of Mycobacterium chubuense NBB4."
US DOE Joint Genome Institute
Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Mikhailova N., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Mattes T. expand/collapse author list , Holmes A., Rutledge P., Paulsen I., Coleman N., Woyke T.
Submitted (JUN-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NBB4 EMBL AFM19005.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP003053 Genomic DNA. Translation: AFM19005.1.
RefSeqYP_006454684.1. NC_018027.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFM19005; AFM19005; Mycch_4291.
GeneID13143453.
KEGGmcb:Mycch_4291.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameI4BNZ8_MYCCN
AccessionPrimary (citable) accession number: I4BNZ8
Entry history
Integrated into UniProtKB/TrEMBL: September 5, 2012
Last sequence update: September 5, 2012
Last modified: April 3, 2013
This is version 7 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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