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I4B5R2 (I4B5R2_TURPD) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 8. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
D-alanine--D-alanine ligase domain protein EMBL AFM12619.1
Gene names
Ordered Locus Names:Turpa_1972 EMBL AFM12619.1
OrganismTurneriella parva (strain ATCC BAA-1111 / DSM 21527 / NCTC 11395 / H) (Leptospira parva) [Complete proteome] [HAMAP] EMBL AFM12619.1
Taxonomic identifier869212 [NCBI]
Taxonomic lineageBacteria › Spirochaetes › Spirochaetales › Leptospiraceae › Turneriella ›

Protein attributes

Sequence length334 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Cell wall formation By similarity. SAAS SAAS005905

Catalytic activity

ATP + 2 D-alanine = ADP + phosphate + D-alanyl-D-alanine. SAAS SAAS005905

Cofactor

Binds 2 magnesium or manganese ions per subunit By similarity. SAAS SAAS005905

Pathway

Cell wall biogenesis; peptidoglycan biosynthesis. SAAS SAAS005905

Subcellular location

Cytoplasm By similarity SAAS SAAS005905.

Sequence similarities

Contains 1 ATP-grasp domain. SAAS SAAS005905

Sequences

Sequence LengthMass (Da)Tools
I4B5R2 [UniParc].

Last modified September 5, 2012. Version 1.
Checksum: 355220509FE7DD80

FASTA33438,104
        10         20         30         40         50         60 
MRVLVAFDFP TALPKNGDYR SLLHAEDWRP TRNVMEAIAR LGHEPILQGV YDDILPLVFT 

        70         80         90        100        110        120 
IKRKKPDIVF NLLESFRQKR HYEGALAGLF DLLQVPYTGC SAEALTICRN KSYTKLLLRH 

       130        140        150        160        170        180 
TKIKFPRSVV FPRGKTNRSI KDLKFPVIVK PLGLEGSDGI SQASFVADEA ACIERVKTLH 

       190        200        210        220        230        240 
ETYEVDALAE EYIEGREIYA GVLGLEKLTA LPLREMLFTN FPEDRPKFAT FHAKWNPEFR 

       250        260        270        280        290        300 
KKWGIKNTFA KGIDEKTQAD IEQISKSAFR ALGLSGFARL DLRLTDKNEI FVLEVNPNPN 

       310        320        330 
IANDDEIAYA SQRLGISYDQ LIQKLLDYGK RRRG

« Hide

References

[1]"The complete chromosome of genome of Turneriella parva DSM 21527."
US DOE Joint Genome Institute (JGI-PGF)
Lucas S., Han J., Lapidus A., Bruce D., Goodwin L., Pitluck S., Peters L., Kyrpides N., Mavromatis K., Ivanova N., Mikhailova N., Chertkov O., Detter J.C., Tapia R., Han C., Land M., Hauser L., Markowitz V. expand/collapse author list , Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Gronow S., Wellnitz S., Brambilla E., Klenk H.-P., Eisen J.A.
Submitted (JUN-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC BAA-1111 / DSM 21527 / NCTC 11395 / H.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002959 Genomic DNA. Translation: AFM12619.1.
RefSeqYP_006440125.1. NC_018020.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFM12619; AFM12619; Turpa_1972.
GeneID13130475.
KEGGtpx:Turpa_1972.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01921.

Enzyme and pathway databases

UniPathwayUPA00219.

Family and domain databases

Gene3D3.30.1490.20. 1 hit.
3.30.470.20. 1 hit.
InterProIPR011761. ATP-grasp.
IPR013815. ATP_grasp_subdomain_1.
IPR013816. ATP_grasp_subdomain_2.
IPR005905. D_ala_D_ala.
IPR011095. Dala_Dala_lig_C.
IPR016185. PreATP-grasp_dom.
[Graphical view]
PANTHERPTHR23132. PTHR23132. 1 hit.
PfamPF07478. Dala_Dala_lig_C. 1 hit.
[Graphical view]
SUPFAMSSF52440. PreATP-grasp-like. 1 hit.
PROSITEPS50975. ATP_GRASP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameI4B5R2_TURPD
AccessionPrimary (citable) accession number: I4B5R2
Entry history
Integrated into UniProtKB/TrEMBL: September 5, 2012
Last sequence update: September 5, 2012
Last modified: April 3, 2013
This is version 8 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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