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I4B3K5 (I4B3K5_TURPD) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 7. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Isocitrate dehydrogenase, NADP-dependent EMBL AFM11862.1
Gene names
Ordered Locus Names:Turpa_1214 EMBL AFM11862.1
OrganismTurneriella parva (strain ATCC BAA-1111 / DSM 21527 / NCTC 11395 / H) (Leptospira parva) [Complete proteome] [HAMAP] EMBL AFM11862.1
Taxonomic identifier869212 [NCBI]
Taxonomic lineageBacteria › Spirochaetes › Spirochaetales › Leptospiraceae › Turneriella ›

Protein attributes

Sequence length742 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Binds 1 magnesium or manganese ion per subunit By similarity. PIRSR PIRSR009407-3

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 3434 Potential EMBL AFM11862.1
Chain35 – 742708 Potential EMBL AFM11862.1
PRO_5000911343

Regions

Region134 – 1418Substrate binding By similarity PIRSR PIRSR009407-2

Sites

Metal binding3521Magnesium or manganese By similarity PIRSR PIRSR009407-3
Metal binding5501Magnesium or manganese By similarity PIRSR PIRSR009407-3
Metal binding5541Magnesium or manganese By similarity PIRSR PIRSR009407-3
Binding site1471Substrate By similarity PIRSR PIRSR009407-2
Binding site5491Substrate By similarity PIRSR PIRSR009407-2
Site2571Critical for catalysis By similarity PIRSR PIRSR009407-1
Site4221Critical for catalysis By similarity PIRSR PIRSR009407-1

Sequences

Sequence LengthMass (Da)Tools
I4B3K5 [UniParc].

Last modified September 5, 2012. Version 1.
Checksum: 1220201EC922CCAB

FASTA74281,285
        10         20         30         40         50         60 
MADSKSKIIW TKIDEAPALA TYSLLPIVNA FTKAAGVVVE TCDISLAGRI LANFPENLSE 

        70         80         90        100        110        120 
SQKVADGLAA LGKLVLLPEA NVIKLPNISA SIPQLKAAIK ELQSQGYKVP DYPEEPKTED 

       130        140        150        160        170        180 
EKAIKARYAK VLGSAVNPVL REGNSDRRVA RSVKEFAKKN PHKLGEWSKE CKSHVANMKA 

       190        200        210        220        230        240 
GDFFHNEKSV TIEDATDVKF EFEDKSGNKT VLKEKLSLKK GEVFDATFMS AKALRQFIED 

       250        260        270        280        290        300 
QLADAKAKNL LFSVHLKATM MKVSDPIIFG HFVSVYFKDV FAKHAATFQK LGVNPDLGLG 

       310        320        330        340        350        360 
DLYAKIKTLP DAERAEIEAD IQATYSVRPP LAMVDSAKGI TNLHAGNDVI IDASMPVVIR 

       370        380        390        400        410        420 
DSGKMWGPDG KLHECKAVIP DTSYAEFYQT GFDFCRQQGA FDPRVMGNVA NVGLMAQQAE 

       430        440        450        460        470        480 
EYGSHDKTFK APGDGVIRVI DAAGKVLTEH HVETGDIWRA CQTKDEAIRD WVKLAVRRAR 

       490        500        510        520        530        540 
ATGSPAVFWL TSARAHDAQI IAKVNTYLKE HDTSGLEIHI LSLVDAMQFT LERVKAGKDT 

       550        560        570        580        590        600 
ISVTGNVMRD YLTDLFPILE LNTSAKMLSI VPLLNGGGLF ETGAGGSAPK HVQQFQQEGY 

       610        620        630        640        650        660 
LRWDSTGEFL ALGVSLEHLA ATFKNAKAQV LADTIDKAFG KFLDNNKSPA RKVGEIDNRG 

       670        680        690        700        710        720 
SHFYFGLYWA QALAEQTADK ELQARFAPIA KQLTENEAKI DKELIDAQGK PVDMGGYFHP 

       730        740 
DDAKTAKAMR PSATLNSIID AI

« Hide

References

[1]"The complete chromosome of genome of Turneriella parva DSM 21527."
US DOE Joint Genome Institute (JGI-PGF)
Lucas S., Han J., Lapidus A., Bruce D., Goodwin L., Pitluck S., Peters L., Kyrpides N., Mavromatis K., Ivanova N., Mikhailova N., Chertkov O., Detter J.C., Tapia R., Han C., Land M., Hauser L., Markowitz V. expand/collapse author list , Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Gronow S., Wellnitz S., Brambilla E., Klenk H.-P., Eisen J.A.
Submitted (JUN-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC BAA-1111 / DSM 21527 / NCTC 11395 / H.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002959 Genomic DNA. Translation: AFM11862.1.
RefSeqYP_006439368.1. NC_018020.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFM11862; AFM11862; Turpa_1214.
GeneID13128119.
KEGGtpx:Turpa_1214.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK00031.

Family and domain databases

Gene3D3.40.718.10. 3 hits.
InterProIPR004436. Isocitrate_DH_NADP_mono.
IPR024084. IsoPropMal-DH-like_dom.
[Graphical view]
PfamPF03971. IDH. 1 hit.
[Graphical view]
PIRSFPIRSF009407. IDH_monmr. 1 hit.
TIGRFAMsTIGR00178. monomer_idh. 1 hit.
ProtoNetSearch...

Entry information

Entry nameI4B3K5_TURPD
AccessionPrimary (citable) accession number: I4B3K5
Entry history
Integrated into UniProtKB/TrEMBL: September 5, 2012
Last sequence update: September 5, 2012
Last modified: April 3, 2013
This is version 7 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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