Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

I4A4U0

- I4A4U0_DESDJ

UniProt

I4A4U0 - I4A4U0_DESDJ

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Submitted name:

ATP-dependent DNA ligase LigD polymerase module

Gene

Desde_0514

Organism
Desulfitobacterium dehalogenans (strain ATCC 51507 / DSM 9161 / JW/IU-DC1)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciDDEH756499:GLCG-512-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigD polymerase moduleImported
Gene namesi
Ordered Locus Names:Desde_0514Imported
OrganismiDesulfitobacterium dehalogenans (strain ATCC 51507 / DSM 9161 / JW/IU-DC1)Imported
Taxonomic identifieri756499 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesPeptococcaceaeDesulfitobacterium
ProteomesiUP000006053: Chromosome

Structurei

3D structure databases

ProteinModelPortaliI4A4U0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I4A4U0-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTAELNPYNQ KRNFAKTLEP EGIRVISQED LKFVVQHHLA RRDHYDLRLE
60 70 80 90 100
WEGALLSWAV PKGPSYDTRD KRLAVQVEDH PLEYRNFEGT IPKGEYGGGV
110 120 130 140 150
VMLWDEGSWE PYGDVDEGLR EGVLKFVLKG RRLKGKWALV RMKEKAGEKK
160 170 180 190 200
DNWLLLKEKD EYAQTADGIA ELTTSIRTGR TMAEIEEGED EKFTQNPFSS
210 220 230 240 250
IEVQLAKLVH SIPEGKDWLY ELKYDGYRIV AYIEGNSVRL ITRNGHDYTE
260 270 280 290 300
RFRDVASSLL DWAEGRAMIL DGEMVVTDPE GKTDFQALQN YLKNPRAKNL
310 320 330 340 350
TYILFDLLAL DGADLRGHSL IDRKETLAGL MEDAPPNLHY SRHVRGKGKE
360 370 380 390 400
SYLAACEGGM EGIIGKKADS LYSGARNGDW IKLKCAKRQE FVIGGYTLSH
410 420 430 440 450
KKTSGISSLL LGVYEGEELV YAGRAGTGLS EADMKELEEK FKSIKSRVAP
460 470 480 490 500
FKAAPKPRSN EKITWLEPEL VAEIQFAEWT KEDRLRQASF KGLRGDKNPR
510 520 530 540 550
EIQREKADEE IQPQPVQKGR SPMKTNSNSI IIEGIKISSP DKVIFAQPEI
560 570 580 590 600
TKVDVIRYYE KVAERMLPYV SHRVLSIVRC PKGVAQTCFY KKHPGPGSQG
610 620 630 640 650
IVTIPILTSD GGTEDYFYIE NISGLIAEAQ MGTLEFHIWG SRVDELEKPD
660 670 680 690 700
LLVFDLDPDE GMDLGTVRQG VRDIKDILAE LSLNSYLKTS GGKGYHVVVP
710 720 730 740 750
LKPAVSWEVF HDFARGVAQV MEQKWPDRYT SNVRKAKRTN KIFIDWIRNG
760 770 780 790 800
RGATSIAPYS LRARKGAGVS MPILWEELDM VAPDGVDMAE ALRRIEGSDP
810
WQDFFQNQQR LK
Length:812
Mass (Da):91,956
Last modified:September 5, 2012 - v1
Checksum:i79ACFD22DD10E977
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003348 Genomic DNA. Translation: AFL98974.1.
RefSeqiYP_006428768.1. NC_018017.1.

Genome annotation databases

EnsemblBacteriaiAFL98974; AFL98974; Desde_0514.
GeneIDi13120078.
KEGGiddh:Desde_0514.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003348 Genomic DNA. Translation: AFL98974.1 .
RefSeqi YP_006428768.1. NC_018017.1.

3D structure databases

ProteinModelPortali I4A4U0.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AFL98974 ; AFL98974 ; Desde_0514 .
GeneIDi 13120078.
KEGGi ddh:Desde_0514.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci DDEH756499:GLCG-512-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of Desulfitobacterium dehalogenans ATCC 51507."
    Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Ovchinnikova G., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Kruse T.
    , de Vos W.M., Smidt H., Woyke T.
    Submitted (JUN-2012) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 51507 / DSM 9161 / JW/IU-DC1Imported.

Entry informationi

Entry nameiI4A4U0_DESDJ
AccessioniPrimary (citable) accession number: I4A4U0
Entry historyi
Integrated into UniProtKB/TrEMBL: September 5, 2012
Last sequence update: September 5, 2012
Last modified: October 29, 2014
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3