I4A4U0 (I4A4U0_DESDJ) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA ligase LigD polymerase module EMBL AFL98974.1

Gene names

ORF Names:

Desde_0514 EMBL AFL98974.1

Organism

Desulfitobacterium dehalogenans (strain ATCC 51507 / DSM 9161 / JW/IU-DC1) [Complete proteome] [HAMAP] EMBL AFL98974.1

Taxonomic identifier

756499 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Clostridia › Clostridiales › Peptococcaceae › Desulfitobacterium › Desulfitobacterium dehalogenans

Protein attributes

Sequence length	812 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL AFL98974.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro DNA primase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	I4A4U0 [UniParc]. Last modified September 5, 2012. Version 1. Checksum: 79ACFD22DD10E977	FASTA	812	91,956
	10 20 30 40 50 60 MTAELNPYNQ KRNFAKTLEP EGIRVISQED LKFVVQHHLA RRDHYDLRLE WEGALLSWAV 70 80 90 100 110 120 PKGPSYDTRD KRLAVQVEDH PLEYRNFEGT IPKGEYGGGV VMLWDEGSWE PYGDVDEGLR 130 140 150 160 170 180 EGVLKFVLKG RRLKGKWALV RMKEKAGEKK DNWLLLKEKD EYAQTADGIA ELTTSIRTGR 190 200 210 220 230 240 TMAEIEEGED EKFTQNPFSS IEVQLAKLVH SIPEGKDWLY ELKYDGYRIV AYIEGNSVRL 250 260 270 280 290 300 ITRNGHDYTE RFRDVASSLL DWAEGRAMIL DGEMVVTDPE GKTDFQALQN YLKNPRAKNL 310 320 330 340 350 360 TYILFDLLAL DGADLRGHSL IDRKETLAGL MEDAPPNLHY SRHVRGKGKE SYLAACEGGM 370 380 390 400 410 420 EGIIGKKADS LYSGARNGDW IKLKCAKRQE FVIGGYTLSH KKTSGISSLL LGVYEGEELV 430 440 450 460 470 480 YAGRAGTGLS EADMKELEEK FKSIKSRVAP FKAAPKPRSN EKITWLEPEL VAEIQFAEWT 490 500 510 520 530 540 KEDRLRQASF KGLRGDKNPR EIQREKADEE IQPQPVQKGR SPMKTNSNSI IIEGIKISSP 550 560 570 580 590 600 DKVIFAQPEI TKVDVIRYYE KVAERMLPYV SHRVLSIVRC PKGVAQTCFY KKHPGPGSQG 610 620 630 640 650 660 IVTIPILTSD GGTEDYFYIE NISGLIAEAQ MGTLEFHIWG SRVDELEKPD LLVFDLDPDE 670 680 690 700 710 720 GMDLGTVRQG VRDIKDILAE LSLNSYLKTS GGKGYHVVVP LKPAVSWEVF HDFARGVAQV 730 740 750 760 770 780 MEQKWPDRYT SNVRKAKRTN KIFIDWIRNG RGATSIAPYS LRARKGAGVS MPILWEELDM 790 800 810 VAPDGVDMAE ALRRIEGSDP WQDFFQNQQR LK

References

[1]

"Complete sequence of Desulfitobacterium dehalogenans ATCC 51507." Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Ovchinnikova G., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Kruse T. , de Vos W.M., Smidt H., Woyke T. Submitted (JUN-2012) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 51507 / DSM 9161 / JW/IU-DC1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP003348 Genomic DNA. Translation: AFL98974.1.
RefSeq	YP_006428768.1. NC_018017.1.
3D structure databases
ProteinModelPortal	I4A4U0.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AFL98974; AFL98974; Desde_0514.
GeneID	13120078.
KEGG	ddh:Desde_0514.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01971.
Enzyme and pathway databases
BioCyc	DDEH756499:GLCG-512-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR002755. DNA_primase_S. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF01896. DNA_primase_S. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

I4A4U0_DESDJ

Accession

Primary (citable) accession number: I4A4U0

Entry history

Integrated into UniProtKB/TrEMBL:	September 5, 2012
Last sequence update:	September 5, 2012
Last modified:	May 29, 2013
This is version 9 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)