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I4A4U0 (I4A4U0_DESDJ) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 12. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Desde_0514 EMBL AFL98974.1
OrganismDesulfitobacterium dehalogenans (strain ATCC 51507 / DSM 9161 / JW/IU-DC1) [Complete proteome] [HAMAP] EMBL AFL98974.1
Taxonomic identifier756499 [NCBI]
Taxonomic lineageBacteriaFirmicutesClostridiaClostridialesPeptococcaceaeDesulfitobacterium

Protein attributes

Sequence length812 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
I4A4U0 [UniParc].

Last modified September 5, 2012. Version 1.
Checksum: 79ACFD22DD10E977

FASTA81291,956
        10         20         30         40         50         60 
MTAELNPYNQ KRNFAKTLEP EGIRVISQED LKFVVQHHLA RRDHYDLRLE WEGALLSWAV 

        70         80         90        100        110        120 
PKGPSYDTRD KRLAVQVEDH PLEYRNFEGT IPKGEYGGGV VMLWDEGSWE PYGDVDEGLR 

       130        140        150        160        170        180 
EGVLKFVLKG RRLKGKWALV RMKEKAGEKK DNWLLLKEKD EYAQTADGIA ELTTSIRTGR 

       190        200        210        220        230        240 
TMAEIEEGED EKFTQNPFSS IEVQLAKLVH SIPEGKDWLY ELKYDGYRIV AYIEGNSVRL 

       250        260        270        280        290        300 
ITRNGHDYTE RFRDVASSLL DWAEGRAMIL DGEMVVTDPE GKTDFQALQN YLKNPRAKNL 

       310        320        330        340        350        360 
TYILFDLLAL DGADLRGHSL IDRKETLAGL MEDAPPNLHY SRHVRGKGKE SYLAACEGGM 

       370        380        390        400        410        420 
EGIIGKKADS LYSGARNGDW IKLKCAKRQE FVIGGYTLSH KKTSGISSLL LGVYEGEELV 

       430        440        450        460        470        480 
YAGRAGTGLS EADMKELEEK FKSIKSRVAP FKAAPKPRSN EKITWLEPEL VAEIQFAEWT 

       490        500        510        520        530        540 
KEDRLRQASF KGLRGDKNPR EIQREKADEE IQPQPVQKGR SPMKTNSNSI IIEGIKISSP 

       550        560        570        580        590        600 
DKVIFAQPEI TKVDVIRYYE KVAERMLPYV SHRVLSIVRC PKGVAQTCFY KKHPGPGSQG 

       610        620        630        640        650        660 
IVTIPILTSD GGTEDYFYIE NISGLIAEAQ MGTLEFHIWG SRVDELEKPD LLVFDLDPDE 

       670        680        690        700        710        720 
GMDLGTVRQG VRDIKDILAE LSLNSYLKTS GGKGYHVVVP LKPAVSWEVF HDFARGVAQV 

       730        740        750        760        770        780 
MEQKWPDRYT SNVRKAKRTN KIFIDWIRNG RGATSIAPYS LRARKGAGVS MPILWEELDM 

       790        800        810 
VAPDGVDMAE ALRRIEGSDP WQDFFQNQQR LK 

« Hide

References

[1]"Complete sequence of Desulfitobacterium dehalogenans ATCC 51507."
Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Ovchinnikova G., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Kruse T. expand/collapse author list , de Vos W.M., Smidt H., Woyke T.
Submitted (JUN-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 51507 / DSM 9161 / JW/IU-DC1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP003348 Genomic DNA. Translation: AFL98974.1.
RefSeqYP_006428768.1. NC_018017.1.

3D structure databases

ProteinModelPortalI4A4U0.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFL98974; AFL98974; Desde_0514.
GeneID13120078.
KEGGddh:Desde_0514.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycDDEH756499:GLCG-512-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameI4A4U0_DESDJ
AccessionPrimary (citable) accession number: I4A4U0
Entry history
Integrated into UniProtKB/TrEMBL: September 5, 2012
Last sequence update: September 5, 2012
Last modified: April 16, 2014
This is version 12 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)