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I4A4U0

- I4A4U0_DESDJ

UniProt

I4A4U0 - I4A4U0_DESDJ

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Protein
Submitted name:

ATP-dependent DNA ligase LigD polymerase module

Gene
Desde_0514
Organism
Desulfitobacterium dehalogenans (strain ATCC 51507 / DSM 9161 / JW/IU-DC1)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciDDEH756499:GLCG-512-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigD polymerase moduleImported
Gene namesi
Ordered Locus Names:Desde_0514Imported
OrganismiDesulfitobacterium dehalogenans (strain ATCC 51507 / DSM 9161 / JW/IU-DC1)Imported
Taxonomic identifieri756499 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesPeptococcaceaeDesulfitobacterium
ProteomesiUP000006053: Chromosome

Structurei

3D structure databases

ProteinModelPortaliI4A4U0.

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I4A4U0-1 [UniParc]FASTAAdd to Basket

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MTAELNPYNQ KRNFAKTLEP EGIRVISQED LKFVVQHHLA RRDHYDLRLE    50
WEGALLSWAV PKGPSYDTRD KRLAVQVEDH PLEYRNFEGT IPKGEYGGGV 100
VMLWDEGSWE PYGDVDEGLR EGVLKFVLKG RRLKGKWALV RMKEKAGEKK 150
DNWLLLKEKD EYAQTADGIA ELTTSIRTGR TMAEIEEGED EKFTQNPFSS 200
IEVQLAKLVH SIPEGKDWLY ELKYDGYRIV AYIEGNSVRL ITRNGHDYTE 250
RFRDVASSLL DWAEGRAMIL DGEMVVTDPE GKTDFQALQN YLKNPRAKNL 300
TYILFDLLAL DGADLRGHSL IDRKETLAGL MEDAPPNLHY SRHVRGKGKE 350
SYLAACEGGM EGIIGKKADS LYSGARNGDW IKLKCAKRQE FVIGGYTLSH 400
KKTSGISSLL LGVYEGEELV YAGRAGTGLS EADMKELEEK FKSIKSRVAP 450
FKAAPKPRSN EKITWLEPEL VAEIQFAEWT KEDRLRQASF KGLRGDKNPR 500
EIQREKADEE IQPQPVQKGR SPMKTNSNSI IIEGIKISSP DKVIFAQPEI 550
TKVDVIRYYE KVAERMLPYV SHRVLSIVRC PKGVAQTCFY KKHPGPGSQG 600
IVTIPILTSD GGTEDYFYIE NISGLIAEAQ MGTLEFHIWG SRVDELEKPD 650
LLVFDLDPDE GMDLGTVRQG VRDIKDILAE LSLNSYLKTS GGKGYHVVVP 700
LKPAVSWEVF HDFARGVAQV MEQKWPDRYT SNVRKAKRTN KIFIDWIRNG 750
RGATSIAPYS LRARKGAGVS MPILWEELDM VAPDGVDMAE ALRRIEGSDP 800
WQDFFQNQQR LK 812
Length:812
Mass (Da):91,956
Last modified:September 5, 2012 - v1
Checksum:i79ACFD22DD10E977
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003348 Genomic DNA. Translation: AFL98974.1.
RefSeqiWP_014792468.1. NC_018017.1.
YP_006428768.1. NC_018017.1.

Genome annotation databases

EnsemblBacteriaiAFL98974; AFL98974; Desde_0514.
GeneIDi13120078.
KEGGiddh:Desde_0514.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003348 Genomic DNA. Translation: AFL98974.1 .
RefSeqi WP_014792468.1. NC_018017.1.
YP_006428768.1. NC_018017.1.

3D structure databases

ProteinModelPortali I4A4U0.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AFL98974 ; AFL98974 ; Desde_0514 .
GeneIDi 13120078.
KEGGi ddh:Desde_0514.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci DDEH756499:GLCG-512-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of Desulfitobacterium dehalogenans ATCC 51507."
    Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Ovchinnikova G., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Kruse T.
    , de Vos W.M., Smidt H., Woyke T.
    Submitted (JUN-2012) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 51507 / DSM 9161 / JW/IU-DC1.

Entry informationi

Entry nameiI4A4U0_DESDJ
AccessioniPrimary (citable) accession number: I4A4U0
Entry historyi
Integrated into UniProtKB/TrEMBL: September 5, 2012
Last sequence update: September 5, 2012
Last modified: September 3, 2014
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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