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I4A4U0

- I4A4U0_DESDJ

UniProt

I4A4U0 - I4A4U0_DESDJ

Protein
Submitted name:

ATP-dependent DNA ligase LigD polymerase module

Gene

Desde_0514

Organism
Desulfitobacterium dehalogenans (strain ATCC 51507 / DSM 9161 / JW/IU-DC1)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 14 (01 Oct 2014)
      Sequence version 1 (05 Sep 2012)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciDDEH756499:GLCG-512-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligase LigD polymerase moduleImported
    Gene namesi
    Ordered Locus Names:Desde_0514Imported
    OrganismiDesulfitobacterium dehalogenans (strain ATCC 51507 / DSM 9161 / JW/IU-DC1)Imported
    Taxonomic identifieri756499 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesPeptococcaceaeDesulfitobacterium
    ProteomesiUP000006053: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliI4A4U0.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    I4A4U0-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTAELNPYNQ KRNFAKTLEP EGIRVISQED LKFVVQHHLA RRDHYDLRLE    50
    WEGALLSWAV PKGPSYDTRD KRLAVQVEDH PLEYRNFEGT IPKGEYGGGV 100
    VMLWDEGSWE PYGDVDEGLR EGVLKFVLKG RRLKGKWALV RMKEKAGEKK 150
    DNWLLLKEKD EYAQTADGIA ELTTSIRTGR TMAEIEEGED EKFTQNPFSS 200
    IEVQLAKLVH SIPEGKDWLY ELKYDGYRIV AYIEGNSVRL ITRNGHDYTE 250
    RFRDVASSLL DWAEGRAMIL DGEMVVTDPE GKTDFQALQN YLKNPRAKNL 300
    TYILFDLLAL DGADLRGHSL IDRKETLAGL MEDAPPNLHY SRHVRGKGKE 350
    SYLAACEGGM EGIIGKKADS LYSGARNGDW IKLKCAKRQE FVIGGYTLSH 400
    KKTSGISSLL LGVYEGEELV YAGRAGTGLS EADMKELEEK FKSIKSRVAP 450
    FKAAPKPRSN EKITWLEPEL VAEIQFAEWT KEDRLRQASF KGLRGDKNPR 500
    EIQREKADEE IQPQPVQKGR SPMKTNSNSI IIEGIKISSP DKVIFAQPEI 550
    TKVDVIRYYE KVAERMLPYV SHRVLSIVRC PKGVAQTCFY KKHPGPGSQG 600
    IVTIPILTSD GGTEDYFYIE NISGLIAEAQ MGTLEFHIWG SRVDELEKPD 650
    LLVFDLDPDE GMDLGTVRQG VRDIKDILAE LSLNSYLKTS GGKGYHVVVP 700
    LKPAVSWEVF HDFARGVAQV MEQKWPDRYT SNVRKAKRTN KIFIDWIRNG 750
    RGATSIAPYS LRARKGAGVS MPILWEELDM VAPDGVDMAE ALRRIEGSDP 800
    WQDFFQNQQR LK 812
    Length:812
    Mass (Da):91,956
    Last modified:September 5, 2012 - v1
    Checksum:i79ACFD22DD10E977
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003348 Genomic DNA. Translation: AFL98974.1.
    RefSeqiWP_014792468.1. NC_018017.1.
    YP_006428768.1. NC_018017.1.

    Genome annotation databases

    EnsemblBacteriaiAFL98974; AFL98974; Desde_0514.
    GeneIDi13120078.
    KEGGiddh:Desde_0514.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003348 Genomic DNA. Translation: AFL98974.1 .
    RefSeqi WP_014792468.1. NC_018017.1.
    YP_006428768.1. NC_018017.1.

    3D structure databases

    ProteinModelPortali I4A4U0.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AFL98974 ; AFL98974 ; Desde_0514 .
    GeneIDi 13120078.
    KEGGi ddh:Desde_0514.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci DDEH756499:GLCG-512-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of Desulfitobacterium dehalogenans ATCC 51507."
      Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Ovchinnikova G., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Kruse T.
      , de Vos W.M., Smidt H., Woyke T.
      Submitted (JUN-2012) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 51507 / DSM 9161 / JW/IU-DC1Imported.

    Entry informationi

    Entry nameiI4A4U0_DESDJ
    AccessioniPrimary (citable) accession number: I4A4U0
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 5, 2012
    Last sequence update: September 5, 2012
    Last modified: October 1, 2014
    This is version 14 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3