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I3YUI4 (I3YUI4_AEQSU) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 11. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length530 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AFL80652.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
I3YUI4 [UniParc].

Last modified September 5, 2012. Version 1.
Checksum: 3D678C1D4DD2C3FF

FASTA53061,454
        10         20         30         40         50         60 
MKDFAQLIKK LDSTNKTNEK VAALTAYFQN ANDDDKLWTI AILSHRRPKR PVNTTLLRLW 

        70         80         90        100        110        120 
ATEISGIPLW LFEESYHIVG DLAETIALIL PTSEEHSEKS LSTFVSEIIA LRTLPEEEKK 

       130        140        150        160        170        180 
KYLHYNWLAL NYFERFVFNK ILTGSFRIGV SQKLMTRALS KATAIDEDIL AYKLMGDWTP 

       190        200        210        220        230        240 
EKTTFQKLIL EENPEDYLSK PYPFYLAYAV EADFQKDLGA ISDWSFEHKW DGIRSQVIIR 

       250        260        270        280        290        300 
NDEVFVWSRG EELVTDKYPE FQRFLSAIPN GTVIDGEILP FGAGEIGNFN ALQTRIGRKN 

       310        320        330        340        350        360 
ISKALLKKTP VILNAYDLLE WQGEDIRQKP FSERRKILDE LIQKINSEEV GIYLSETMNF 

       370        380        390        400        410        420 
ETWEEAAEER KLSREKRSEG LMLKRKDSPY LVGRKKGDWW KWKIDPFTID AVLTYAMRGH 

       430        440        450        460        470        480 
GRRANLYTDY TFGLWNDGEL VTFAKAYSGL TDAEFRQVDA WIKRNTLERF GPVRSVTPHH 

       490        500        510        520        530 
VFEIAFEGIA ESSRHKSGIA TRFPRILRWR KDKPIAEANT LDDLKALIPK 

« Hide

References

[1]"The complete genome of Aequorivita sublithincola DSM 14238."
US DOE Joint Genome Institute (JGI-PGF)
Lucas S., Copeland A., Lapidus A., Goodwin L., Pitluck S., Peters L., Munk A.C.C., Kyrpides N., Mavromatis K., Pagani I., Ivanova N., Ovchinnikova G., Zeytun A., Detter J.C., Han C., Land M., Hauser L., Markowitz V. expand/collapse author list , Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Tindall B., Faehnrich R., Brambilla E., Klenk H.-P., Eisen J.A.
Submitted (JUN-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 14238 / LMG 21431 / ACAM 643 / 9-3.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP003280 Genomic DNA. Translation: AFL80652.1.
RefSeqYP_006417667.1. NC_018013.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFL80652; AFL80652; Aeqsu_1156.
GeneID13044541.
KEGGasl:Aeqsu_1156.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycASUB746697:GL7Y-1156-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameI3YUI4_AEQSU
AccessionPrimary (citable) accession number: I3YUI4
Entry history
Integrated into UniProtKB/TrEMBL: September 5, 2012
Last sequence update: September 5, 2012
Last modified: April 16, 2014
This is version 11 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)