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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

Aeqsu_1156

Organism
Aequorivita sublithincola (strain DSM 14238 / LMG 21431 / ACAM 643 / 9-3)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciASUB746697:GL7Y-1156-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Aeqsu_1156Imported
OrganismiAequorivita sublithincola (strain DSM 14238 / LMG 21431 / ACAM 643 / 9-3)Imported
Taxonomic identifieri746697 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeAequorivita
ProteomesiUP000006049: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiGQPYPFF.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I3YUI4-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKDFAQLIKK LDSTNKTNEK VAALTAYFQN ANDDDKLWTI AILSHRRPKR
60 70 80 90 100
PVNTTLLRLW ATEISGIPLW LFEESYHIVG DLAETIALIL PTSEEHSEKS
110 120 130 140 150
LSTFVSEIIA LRTLPEEEKK KYLHYNWLAL NYFERFVFNK ILTGSFRIGV
160 170 180 190 200
SQKLMTRALS KATAIDEDIL AYKLMGDWTP EKTTFQKLIL EENPEDYLSK
210 220 230 240 250
PYPFYLAYAV EADFQKDLGA ISDWSFEHKW DGIRSQVIIR NDEVFVWSRG
260 270 280 290 300
EELVTDKYPE FQRFLSAIPN GTVIDGEILP FGAGEIGNFN ALQTRIGRKN
310 320 330 340 350
ISKALLKKTP VILNAYDLLE WQGEDIRQKP FSERRKILDE LIQKINSEEV
360 370 380 390 400
GIYLSETMNF ETWEEAAEER KLSREKRSEG LMLKRKDSPY LVGRKKGDWW
410 420 430 440 450
KWKIDPFTID AVLTYAMRGH GRRANLYTDY TFGLWNDGEL VTFAKAYSGL
460 470 480 490 500
TDAEFRQVDA WIKRNTLERF GPVRSVTPHH VFEIAFEGIA ESSRHKSGIA
510 520 530
TRFPRILRWR KDKPIAEANT LDDLKALIPK
Length:530
Mass (Da):61,454
Last modified:September 5, 2012 - v1
Checksum:i3D678C1D4DD2C3FF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003280 Genomic DNA. Translation: AFL80652.1.
RefSeqiWP_014781910.1. NC_018013.1.
YP_006417667.1. NC_018013.1.

Genome annotation databases

EnsemblBacteriaiAFL80652; AFL80652; Aeqsu_1156.
GeneIDi13044541.
KEGGiasl:Aeqsu_1156.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003280 Genomic DNA. Translation: AFL80652.1.
RefSeqiWP_014781910.1. NC_018013.1.
YP_006417667.1. NC_018013.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAFL80652; AFL80652; Aeqsu_1156.
GeneIDi13044541.
KEGGiasl:Aeqsu_1156.

Phylogenomic databases

KOiK01971.
OMAiGQPYPFF.

Enzyme and pathway databases

BioCyciASUB746697:GL7Y-1156-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 14238 / LMG 21431 / ACAM 643 / 9-3Imported.

Entry informationi

Entry nameiI3YUI4_AEQSU
AccessioniPrimary (citable) accession number: I3YUI4
Entry historyi
Integrated into UniProtKB/TrEMBL: September 5, 2012
Last sequence update: September 5, 2012
Last modified: February 4, 2015
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.