I3YQA4 (I3YQA4_ALIFI) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Glutamate decarboxylase EMBL AFL79172.1
EC=4.1.1.15 EMBL AFL79172.1

Gene names

Ordered Locus Names:

Alfi_2924 EMBL AFL79172.1

Organism

Alistipes finegoldii (strain DSM 17242 / JCM 16770 / AHN 2437 / CCUG 46020 / CIP 107999) [Complete proteome] [HAMAP] EMBL AFL79172.1

Taxonomic identifier

679935 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Bacteroidetes/Chlorobi group › Bacteroidetes › Bacteroidia › Bacteroidales › Rikenellaceae › Alistipes › Alistipes finegoldii

Protein attributes

Sequence length	471 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000382
Sequence similarities	Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU000382
Molecular function	Lyase RuleBase RU000382 EMBL AFL79172.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	glutamate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	glutamate decarboxylase activity Inferred from electronic annotation. Source: EC pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	I3YQA4 [UniParc]. Last modified September 5, 2012. Version 1. Checksum: 50F0A6D9DB7024D2	FASTA	471	54,064
	10 20 30 40 50 60 MNQQRHTNED TLTDIFGSEE MRNPAPTEFI PKGKTSPEIA YQLVKDETYP QTQPRLNLAT 70 80 90 100 110 120 FVTTYMDDYA TRLMNEAINV NYIDETEYPR VAVMCGRCLN IVANLWNTPE KAEWKTGALG 130 140 150 160 170 180 IGSSEACMLG GVAAWLRWRN RRKAAGKPFD KPNLVMSAGF QVVWEKFCQL WQIELRTVPL 190 200 210 220 230 240 TLDHITLDPK QALEMCDENT ICIVPIAGVT WTGLDDDIEG LDKALDEYNA KTGYEIPIHV 250 260 270 280 290 300 DAASGGFILP FLKPEKKWDF RLKWVLSIST SGHKYGLVYP GLGWVVWKDK KYLPDEMSFS 310 320 330 340 350 360 VNYLGANITQ VGLNFSRPAA QILGQYYNFI RLGFEGYKEI QQNSMDVAKY CHQQIGTMKC 370 380 390 400 410 420 FKNYSKEVVN PLFIWMMDPE YDKKAKWTLF DLQAKLQQSG WMVPAYTMPK NIENVVVMRI 430 440 450 460 470 VVRQGMSRDM ADMLMGDIRN AVAEFEQLEY PTTSRIKYDN MEHQKGKVFT H

References

[1]

"The complete genome of Alistipes finegoldii DSM 17242." US DOE Joint Genome Institute (JGI-PGF) Lucas S., Copeland A., Lapidus A., Goodwin L., Pitluck S., Peters L., Munk A.C.C., Kyrpides N., Mavromatis K., Pagani I., Ivanova N., Ovchinnikova G., Zeytun A., Detter J.C., Han C., Land M., Hauser L., Markowitz V. , Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Gronow S., Wellnitz S., Brambilla E., Klenk H.-P., Eisen J.A. Submitted (JUN-2012) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 17242 / JCM 16770 / AHN 2437 / CCUG 46020 / CIP 107999.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP003274 Genomic DNA. Translation: AFL79172.1.
RefSeq	YP_006411857.1. NC_018011.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AFL79172; AFL79172; Alfi_2924.
GeneID	13054180.
KEGG	afd:Alfi_2924.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01580.
Family and domain databases
Gene3D	3.40.640.10. 1 hit.
InterPro	IPR010107. Glutamate_decarboxylase. IPR002129. PyrdxlP-dep_de-COase. IPR015424. PyrdxlP-dep_Trfase. IPR015421. PyrdxlP-dep_Trfase_major_sub1. [Graphical view]
PANTHER	PTHR11999:SF1. PTHR11999:SF1. 1 hit.
Pfam	PF00282. Pyridoxal_deC. 1 hit. [Graphical view]
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMs	TIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNet	Search...

Entry information

Entry name

I3YQA4_ALIFI

Accession

Primary (citable) accession number: I3YQA4

Entry history

Integrated into UniProtKB/TrEMBL:	September 5, 2012
Last sequence update:	September 5, 2012
Last modified:	April 3, 2013
This is version 7 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)