I3YIB0 (I3YIB0_ALIFI) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Alanine racemase EMBL AFL76728.1

Gene names

Ordered Locus Names:

Alfi_0326 EMBL AFL76728.1

Organism

Alistipes finegoldii (strain DSM 17242 / JCM 16770 / AHN 2437 / CCUG 46020 / CIP 107999) [Complete proteome] [HAMAP] EMBL AFL76728.1

Taxonomic identifier

679935 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Bacteroidetes/Chlorobi group › Bacteroidetes › Bacteroidia › Bacteroidales › Rikenellaceae › Alistipes › Alistipes finegoldii

Protein attributes

Sequence length	792 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. SAAS SAAS011079

Ontologies

Keywords
Ligand	Pyridoxal phosphate SAAS SAAS011079
Molecular function	Isomerase SAAS SAAS011079
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	alanine metabolic process Inferred from electronic annotation. Source: InterPro biosynthetic process Inferred from electronic annotation. Source: InterPro cell division Inferred from electronic annotation. Source: InterPro regulation of cell shape Inferred from electronic annotation. Source: InterPro
Cellular_component	cytoplasm Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity Inferred from electronic annotation. Source: InterPro alanine racemase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	I3YIB0 [UniParc]. Last modified September 5, 2012. Version 1. Checksum: C8A9011A0CEFD5F7	FASTA	792	86,894
	10 20 30 40 50 60 MNYRLSRIAA ICGGKFSGCD SEVRSVVTDS RSLSCELGCR PMFVAMRGAN HDSHDFIADM 70 80 90 100 110 120 QSRGVRAFLV ERGVEASSCT GECGFVQVDN AIEALQRLAA YHRAQFRGTV VGITGSNGKT 130 140 150 160 170 180 VIKEWIAEEL PEGMKYYRSP KSYNSQLGVP LSVLMLEGDE ELAIFEAGIS KPGEMERLER 190 200 210 220 230 240 IIRPDAVIFT SIGDAHQENF INLEQKCDEK MILARSASKI IYHSYYEPLG RMVAAHFADR 250 260 270 280 290 300 RPVDAASYPE VPESVIGNAA SRRNAQIVEA FCDAMRYPAP SFAGAPSVAM RLEVKEGIND 310 320 330 340 350 360 SILINDAYNL DLNSLALALD YLHSVALNRR RTLVLSDISQ SGLSDDELYS RVAGMVARAG 370 380 390 400 410 420 IDFLIGIGPR LKRYAALFAC DKEFFTATDE CVARINRDAV AGRAILLKGA RDFRFEKLVH 430 440 450 460 470 480 LLSRKSHTTV LEVDLDAMIH NLNYFRSKLS FGTRLVAMVK AGSYGAGDFE VAQMLQHQGV 490 500 510 520 530 540 DYLAVAFADE GVLLRERGIS MPIVVLNADA DSFDVMIANR LEPEIYSFHS LGAFADAVTH 550 560 570 580 590 600 AGESRYPIHV KLDTGMHRLG FVEQEIAQLC ATLAATPQVK AASVFSHLNC ADMPEEDAYT 610 620 630 640 650 660 RAQIALYDRM SAQLAASLPY PVIRHTANSA AIERFPEAQF DMCRLGLGLY GFGFRHNDAL 670 680 690 700 710 720 RPVSTLKTRI VQIKRLPAGD AVGYGRAGKL TRPTTTATIP IGYADGLDRH LGCGRWSVLV 730 740 750 760 770 780 AGQPAPIIGR VCMDSCMIDI TDIPGVKEGD EVSVFSPVPG NDLETMARVL DTISYEIMTS 790 VSGRVKRIYL KE

References

[1]

"The complete genome of Alistipes finegoldii DSM 17242." US DOE Joint Genome Institute (JGI-PGF) Lucas S., Copeland A., Lapidus A., Goodwin L., Pitluck S., Peters L., Munk A.C.C., Kyrpides N., Mavromatis K., Pagani I., Ivanova N., Ovchinnikova G., Zeytun A., Detter J.C., Han C., Land M., Hauser L., Markowitz V. , Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Gronow S., Wellnitz S., Brambilla E., Klenk H.-P., Eisen J.A. Submitted (JUN-2012) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 17242 / JCM 16770 / AHN 2437 / CCUG 46020 / CIP 107999.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP003274 Genomic DNA. Translation: AFL76728.1.
RefSeq	YP_006409413.1. NC_018011.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AFL76728; AFL76728; Alfi_0326.
GeneID	13051582.
KEGG	afd:Alfi_0326.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01775.
Family and domain databases
Gene3D	2.40.37.10. 1 hit. 3.40.1190.10. 1 hit. 3.90.190.20. 1 hit.
HAMAP	MF_01201. Ala_racemase.
InterPro	IPR000821. Ala_racemase. IPR009006. Ala_racemase/Decarboxylase_C. IPR011079. Ala_racemase_C. IPR001608. Ala_racemase_N. IPR004101. Mur_ligase_C. IPR013221. Mur_ligase_cen. IPR000713. Mur_ligase_N. IPR005863. UDP-N-AcMur-pentapeptide_synth. [Graphical view]
PANTHER	PTHR23135:SF3. PTHR23135:SF3. 1 hit.
Pfam	PF00842. Ala_racemase_C. 1 hit. PF01168. Ala_racemase_N. 1 hit. PF01225. Mur_ligase. 1 hit. PF08245. Mur_ligase_M. 1 hit. [Graphical view]
PRINTS	PR00992. ALARACEMASE.
SMART	SM01005. Ala_racemase_C. 1 hit. [Graphical view]
SUPFAM	SSF53244. Mur_ligase_C. 1 hit. SSF53623. Mur_ligase_cen. 1 hit. SSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMs	TIGR00492. alr. 1 hit.
ProtoNet	Search...

Entry information

Entry name

I3YIB0_ALIFI

Accession

Primary (citable) accession number: I3YIB0

Entry history

Integrated into UniProtKB/TrEMBL:	September 5, 2012
Last sequence update:	September 5, 2012
Last modified:	April 3, 2013
This is version 7 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)