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I3YDD4 (I3YDD4_THIV6) Unreviewed, UniProtKB/TrEMBL

Last modified January 22, 2014. Version 11. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Thivi_3125 EMBL AFL75002.1
OrganismThiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) (Chromatium violascens) [Complete proteome] [HAMAP] EMBL AFL75002.1
Taxonomic identifier765911 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaChromatialesChromatiaceaeThiocystis

Protein attributes

Sequence length378 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the RuBisCO large chain family. RuleBase RU004228

Ontologies

Sequences

Sequence LengthMass (Da)Tools
I3YDD4 [UniParc].

Last modified September 5, 2012. Version 1.
Checksum: DBBE8A1C904B72AE

FASTA37840,790
        10         20         30         40         50         60 
MTQNRTLSLS GERFTAVYHI VCKPAEAEAR ARDICVEQTI EFPEALVTDA SIRDQIVGQV 

        70         80         90        100        110        120 
LSLQAVGEAR FEARIGYPVE AAGRELTQLI NVLFGNISIK PGVRLVGFEL PESLARQYRG 

       130        140        150        160        170        180 
PRFGQAGLRA LVDVHDRPLL CTAIKPMGLS PVALADLAYR LALGGIHLIK DDHGLSDQTF 

       190        200        210        220        230        240 
CRYEERVRRC AEAVERANRE TGQRCLYLPN VTAPAGEIAS RARLAKDAGA GGLLFCPGLA 

       250        260        270        280        290        300 
GFDAMRALAD DDALALPILS HPAFQGTFCV HPDAGLSHGV LFGQLNRLAG ADATIFPSWG 

       310        320        330        340        350        360 
GRFSFTQAEC RDLVAGATRP MGELRTIFPV PGGGMRLDRV AELSDFYGRD CILLIGGDLH 

       370 
AHGPDLIESC RRFVAQAG 

« Hide

References

[1]"Complete sequence of Thiocystis violascens DSM 198."
US DOE Joint Genome Institute
Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Ovchinnikova G., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Vogl K. expand/collapse author list , Liu Z., Frigaard N.-U., Bryant D., Woyke T.
Submitted (JUN-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 17096 / DSM 198 / 6111.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP003154 Genomic DNA. Translation: AFL75002.1.
RefSeqYP_006415127.1. NC_018012.1.

3D structure databases

ProteinModelPortalI3YDD4.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFL75002; AFL75002; Thivi_3125.
GeneID13050889.
KEGGtvi:Thivi_3125.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01601.

Enzyme and pathway databases

BioCycTVIO765911:GLMH-3111-MONOMER.

Family and domain databases

Gene3D3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
InterProIPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
[Graphical view]
PfamPF00016. RuBisCO_large. 1 hit.
[Graphical view]
SUPFAMSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
ProtoNetSearch...

Entry information

Entry nameI3YDD4_THIV6
AccessionPrimary (citable) accession number: I3YDD4
Entry history
Integrated into UniProtKB/TrEMBL: September 5, 2012
Last sequence update: September 5, 2012
Last modified: January 22, 2014
This is version 11 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)