I3YDD4 (I3YDD4_THIV6) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Ribulose 1,5-bisphosphate carboxylase, large subunit EMBL AFL75002.1

Gene names

Ordered Locus Names:

Thivi_3125 EMBL AFL75002.1

Organism

Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) (Chromatium violascens) [Complete proteome] [HAMAP] EMBL AFL75002.1

Taxonomic identifier

765911 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Chromatiales › Chromatiaceae › Thiocystis › Thiocystis violascens

Protein attributes

Sequence length	378 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the RuBisCO large chain family. RuleBase RU004228

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	carbon fixation Inferred from electronic annotation. Source: InterPro
Molecular_function	magnesium ion binding Inferred from electronic annotation. Source: InterPro ribulose-bisphosphate carboxylase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	I3YDD4 [UniParc]. Last modified September 5, 2012. Version 1. Checksum: DBBE8A1C904B72AE	FASTA	378	40,790
	10 20 30 40 50 60 MTQNRTLSLS GERFTAVYHI VCKPAEAEAR ARDICVEQTI EFPEALVTDA SIRDQIVGQV 70 80 90 100 110 120 LSLQAVGEAR FEARIGYPVE AAGRELTQLI NVLFGNISIK PGVRLVGFEL PESLARQYRG 130 140 150 160 170 180 PRFGQAGLRA LVDVHDRPLL CTAIKPMGLS PVALADLAYR LALGGIHLIK DDHGLSDQTF 190 200 210 220 230 240 CRYEERVRRC AEAVERANRE TGQRCLYLPN VTAPAGEIAS RARLAKDAGA GGLLFCPGLA 250 260 270 280 290 300 GFDAMRALAD DDALALPILS HPAFQGTFCV HPDAGLSHGV LFGQLNRLAG ADATIFPSWG 310 320 330 340 350 360 GRFSFTQAEC RDLVAGATRP MGELRTIFPV PGGGMRLDRV AELSDFYGRD CILLIGGDLH 370 AHGPDLIESC RRFVAQAG

References

[1]

"Complete sequence of Thiocystis violascens DSM 198." US DOE Joint Genome Institute Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Ovchinnikova G., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Vogl K. , Liu Z., Frigaard N.-U., Bryant D., Woyke T. Submitted (JUN-2012) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 17096 / DSM 198 / 6111.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP003154 Genomic DNA. Translation: AFL75002.1.
RefSeq	YP_006415127.1. NC_018012.1.
3D structure databases
ProteinModelPortal	I3YDD4.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AFL75002; AFL75002; Thivi_3125.
GeneID	13050889.
KEGG	tvi:Thivi_3125.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01601.
Family and domain databases
Gene3D	3.20.20.110. 1 hit. 3.30.70.150. 1 hit.
InterPro	IPR000685. RuBisCO_lsu_C. IPR017443. RuBisCO_lsu_fd_N. [Graphical view]
Pfam	PF00016. RuBisCO_large. 1 hit. [Graphical view]
SUPFAM	SSF51649. RuBisCO_large. 1 hit. SSF54966. RuBisCO_large. 1 hit.
ProtoNet	Search...

Entry information

Entry name

I3YDD4_THIV6

Accession

Primary (citable) accession number: I3YDD4

Entry history

Integrated into UniProtKB/TrEMBL:	September 5, 2012
Last sequence update:	September 5, 2012
Last modified:	May 1, 2013
This is version 8 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)