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I3YDC4

- I3YDC4_THIV6

UniProt

I3YDC4 - I3YDC4_THIV6

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Protein
Submitted name: ATP dependent DNA ligase-like protein
Gene
Thivi_3115
Organism
Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) (Chromatium violascens)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciTVIO765911:GLMH-3101-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligase-like proteinImported
Gene namesi
Ordered Locus Names:Thivi_3115Imported
OrganismiThiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) (Chromatium violascens)Imported
Taxonomic identifieri765911 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaChromatialesChromatiaceaeThiocystis
ProteomesiUP000006062: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 3939 PredictedImported
Add
BLAST
Chaini40 – 309270 PredictedImported
PRO_5000903702Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliI3YDC4.

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

I3YDC4-1 [UniParc]FASTAAdd to Basket

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MLLLLLKPPN GYATMPRFPF RLTSRWLLFL CLAAPPGFAR DVVALPSQPV    50
PTTKPALMLA NVYTEGVDLS AYWVSEKLDG VRAYWDGARL ISRGGHPIQS 100
PEWFTAGFPA IPLDGELWMG RGTFERLSGT VRRLEPAPDD WREIRFMVFD 150
LPDLDAPFGQ RLQRLQQVLA DSANPSLVPV EQVRIANHAD LMARLDAVVQ 200
AGGEGLMLHR DGADYRAGRT DDLLKVKPYQ DAEARVIEHL PGQGKYAGML 250
GALLVEDANG LRFRLGTGFT DAERRAPPPL GSLVTYKYLG YTEKGIPRFA 300
SFLRVRAPE 309
Length:309
Mass (Da):34,312
Last modified:September 5, 2012 - v1
Checksum:i6F22B0C742942414
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003154 Genomic DNA. Translation: AFL74992.1.
RefSeqiWP_014779406.1. NC_018012.1.
YP_006415117.1. NC_018012.1.

Genome annotation databases

EnsemblBacteriaiAFL74992; AFL74992; Thivi_3115.
GeneIDi13048964.
KEGGitvi:Thivi_3115.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003154 Genomic DNA. Translation: AFL74992.1 .
RefSeqi WP_014779406.1. NC_018012.1.
YP_006415117.1. NC_018012.1.

3D structure databases

ProteinModelPortali I3YDC4.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AFL74992 ; AFL74992 ; Thivi_3115 .
GeneIDi 13048964.
KEGGi tvi:Thivi_3115.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci TVIO765911:GLMH-3101-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 17096 / DSM 198 / 6111.

Entry informationi

Entry nameiI3YDC4_THIV6
AccessioniPrimary (citable) accession number: I3YDC4
Entry historyi
Integrated into UniProtKB/TrEMBL: September 5, 2012
Last sequence update: September 5, 2012
Last modified: September 3, 2014
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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