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I3YDC4

- I3YDC4_THIV6

UniProt

I3YDC4 - I3YDC4_THIV6

Protein
Submitted name:

ATP dependent DNA ligase-like protein

Gene

Thivi_3115

Organism
Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) (Chromatium violascens)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 14 (01 Oct 2014)
      Sequence version 1 (05 Sep 2012)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciTVIO765911:GLMH-3101-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligase-like proteinImported
    Gene namesi
    Ordered Locus Names:Thivi_3115Imported
    OrganismiThiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) (Chromatium violascens)Imported
    Taxonomic identifieri765911 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaChromatialesChromatiaceaeThiocystis
    ProteomesiUP000006062: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 3939 PotentialImportedAdd
    BLAST
    Chaini40 – 309270 PotentialImportedPRO_5000903702Add
    BLAST

    Structurei

    3D structure databases

    ProteinModelPortaliI3YDC4.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Keywords - Domaini

    SignalImported

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012310. DNA_ligase_ATP-dep_cent.
    IPR029319. DNA_ligase_OB.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF01068. DNA_ligase_A_M. 1 hit.
    PF14743. DNA_ligase_OB_2. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    I3YDC4-1 [UniParc]FASTAAdd to Basket

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    MLLLLLKPPN GYATMPRFPF RLTSRWLLFL CLAAPPGFAR DVVALPSQPV    50
    PTTKPALMLA NVYTEGVDLS AYWVSEKLDG VRAYWDGARL ISRGGHPIQS 100
    PEWFTAGFPA IPLDGELWMG RGTFERLSGT VRRLEPAPDD WREIRFMVFD 150
    LPDLDAPFGQ RLQRLQQVLA DSANPSLVPV EQVRIANHAD LMARLDAVVQ 200
    AGGEGLMLHR DGADYRAGRT DDLLKVKPYQ DAEARVIEHL PGQGKYAGML 250
    GALLVEDANG LRFRLGTGFT DAERRAPPPL GSLVTYKYLG YTEKGIPRFA 300
    SFLRVRAPE 309
    Length:309
    Mass (Da):34,312
    Last modified:September 5, 2012 - v1
    Checksum:i6F22B0C742942414
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003154 Genomic DNA. Translation: AFL74992.1.
    RefSeqiWP_014779406.1. NC_018012.1.
    YP_006415117.1. NC_018012.1.

    Genome annotation databases

    EnsemblBacteriaiAFL74992; AFL74992; Thivi_3115.
    GeneIDi13048964.
    KEGGitvi:Thivi_3115.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003154 Genomic DNA. Translation: AFL74992.1 .
    RefSeqi WP_014779406.1. NC_018012.1.
    YP_006415117.1. NC_018012.1.

    3D structure databases

    ProteinModelPortali I3YDC4.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AFL74992 ; AFL74992 ; Thivi_3115 .
    GeneIDi 13048964.
    KEGGi tvi:Thivi_3115.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci TVIO765911:GLMH-3101-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012310. DNA_ligase_ATP-dep_cent.
    IPR029319. DNA_ligase_OB.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF01068. DNA_ligase_A_M. 1 hit.
    PF14743. DNA_ligase_OB_2. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 17096 / DSM 198 / 6111Imported.

    Entry informationi

    Entry nameiI3YDC4_THIV6
    AccessioniPrimary (citable) accession number: I3YDC4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 5, 2012
    Last sequence update: September 5, 2012
    Last modified: October 1, 2014
    This is version 14 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3