I3YDC4 (I3YDC4_THIV6) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase-like protein EMBL AFL74992.1

Gene names

Ordered Locus Names:

Thivi_3115 EMBL AFL74992.1

Organism

Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) (Chromatium violascens) [Complete proteome] [HAMAP] EMBL AFL74992.1

Taxonomic identifier

765911 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Chromatiales › Chromatiaceae › Thiocystis › Thiocystis violascens

Protein attributes

Sequence length	309 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Predicted

Ontologies

Keywords
Domain	Signal EMBL AFL74992.1
Molecular function	Ligase EMBL AFL74992.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 39	39	Potential EMBL AFL74992.1
	Chain	40 – 309	270	Potential		PRO_5000903702

Sequences

	Sequence		Length	Mass (Da)
	I3YDC4 [UniParc]. Last modified September 5, 2012. Version 1. Checksum: 6F22B0C742942414	FASTA	309	34,312
	10 20 30 40 50 60 MLLLLLKPPN GYATMPRFPF RLTSRWLLFL CLAAPPGFAR DVVALPSQPV PTTKPALMLA 70 80 90 100 110 120 NVYTEGVDLS AYWVSEKLDG VRAYWDGARL ISRGGHPIQS PEWFTAGFPA IPLDGELWMG 130 140 150 160 170 180 RGTFERLSGT VRRLEPAPDD WREIRFMVFD LPDLDAPFGQ RLQRLQQVLA DSANPSLVPV 190 200 210 220 230 240 EQVRIANHAD LMARLDAVVQ AGGEGLMLHR DGADYRAGRT DDLLKVKPYQ DAEARVIEHL 250 260 270 280 290 300 PGQGKYAGML GALLVEDANG LRFRLGTGFT DAERRAPPPL GSLVTYKYLG YTEKGIPRFA SFLRVRAPE

References

[1]

"Complete sequence of Thiocystis violascens DSM 198." US DOE Joint Genome Institute Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Ovchinnikova G., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Vogl K. , Liu Z., Frigaard N.-U., Bryant D., Woyke T. Submitted (JUN-2012) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 17096 / DSM 198 / 6111.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP003154 Genomic DNA. Translation: AFL74992.1.
RefSeq	YP_006415117.1. NC_018012.1.
3D structure databases
ProteinModelPortal	I3YDC4.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AFL74992; AFL74992; Thivi_3115.
GeneID	13048964.
KEGG	tvi:Thivi_3115.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01971.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012310. DNA_ligase_ATP-dep_cent. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

I3YDC4_THIV6

Accession

Primary (citable) accession number: I3YDC4

Entry history

Integrated into UniProtKB/TrEMBL:	September 5, 2012
Last sequence update:	September 5, 2012
Last modified:	April 3, 2013
This is version 7 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)