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I3YDC4 (I3YDC4_THIV6) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 11. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Thivi_3115 EMBL AFL74992.1
OrganismThiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) (Chromatium violascens) [Complete proteome] [HAMAP] EMBL AFL74992.1
Taxonomic identifier765911 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaChromatialesChromatiaceaeThiocystis

Protein attributes

Sequence length309 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Ontologies

Keywords
   DomainSignal EMBL AFL74992.1
   Molecular functionLigase EMBL AFL74992.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 3939 Potential EMBL AFL74992.1
Chain40 – 309270 Potential EMBL AFL74992.1
PRO_5000903702

Sequences

Sequence LengthMass (Da)Tools
I3YDC4 [UniParc].

Last modified September 5, 2012. Version 1.
Checksum: 6F22B0C742942414

FASTA30934,312
        10         20         30         40         50         60 
MLLLLLKPPN GYATMPRFPF RLTSRWLLFL CLAAPPGFAR DVVALPSQPV PTTKPALMLA 

        70         80         90        100        110        120 
NVYTEGVDLS AYWVSEKLDG VRAYWDGARL ISRGGHPIQS PEWFTAGFPA IPLDGELWMG 

       130        140        150        160        170        180 
RGTFERLSGT VRRLEPAPDD WREIRFMVFD LPDLDAPFGQ RLQRLQQVLA DSANPSLVPV 

       190        200        210        220        230        240 
EQVRIANHAD LMARLDAVVQ AGGEGLMLHR DGADYRAGRT DDLLKVKPYQ DAEARVIEHL 

       250        260        270        280        290        300 
PGQGKYAGML GALLVEDANG LRFRLGTGFT DAERRAPPPL GSLVTYKYLG YTEKGIPRFA 


SFLRVRAPE 

« Hide

References

[1]"Complete sequence of Thiocystis violascens DSM 198."
US DOE Joint Genome Institute
Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Ovchinnikova G., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Vogl K. expand/collapse author list , Liu Z., Frigaard N.-U., Bryant D., Woyke T.
Submitted (JUN-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 17096 / DSM 198 / 6111.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP003154 Genomic DNA. Translation: AFL74992.1.
RefSeqYP_006415117.1. NC_018012.1.

3D structure databases

ProteinModelPortalI3YDC4.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFL74992; AFL74992; Thivi_3115.
GeneID13048964.
KEGGtvi:Thivi_3115.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Enzyme and pathway databases

BioCycTVIO765911:GLMH-3101-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameI3YDC4_THIV6
AccessionPrimary (citable) accession number: I3YDC4
Entry history
Integrated into UniProtKB/TrEMBL: September 5, 2012
Last sequence update: September 5, 2012
Last modified: April 16, 2014
This is version 11 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)