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I3XCX5

- I3XCX5_RHIFR

UniProt

I3XCX5 - I3XCX5_RHIFR

Protein
Submitted name:

Putative ATP-dependent DNA ligase YkoU

Gene

ykoU3

Organism
Sinorhizobium fredii USDA 257
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 14 (01 Oct 2014)
      Sequence version 1 (05 Sep 2012)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative ATP-dependent DNA ligase YkoUImported (EC:6.5.1.1Imported)
    Gene namesi
    Name:ykoU3Imported
    ORF Names:USDA257_c52060Imported
    OrganismiSinorhizobium fredii USDA 257Imported
    Taxonomic identifieri1185652 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
    ProteomesiUP000006180: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    I3XCX5-1 [UniParc]FASTAAdd to Basket

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    MAARSEPLSE YNRRRDFSKT REPKGAVART HPGQKRFLVQ KHDATRLHYD    50
    FRLEWEGVLK SWAVTRGPSL NPEDKRLAIR TEDHPLAYGD FEGTIPEGEY 100
    GGGTVMLWDT GWWEPEDDPE KGLKKGKLAF RLHGSRMKGG WALVRMRPRD 150
    GEKRESWLLV KQDDDVASED GESLIKQHVV SARTGRTMDE IAEGRGEKRA 200
    RVWHSNKSTA ANLNAGAVSQ DEGRSKRRAR KSSVKPPAFR PPQLATLVTK 250
    APAGDDWLNE AKFDGYRLIA AVGGGIARCY TRNGLDWTEK FPTIAAALAE 300
    LDCDSALIDG EVVALADQGS NFSALQKALR TGASMRFYAF DLIELDEKDL 350
    SRRPLVERKE KLAALLDSLG TTATIQYSEH VRGNGEHILA AICKAGQEGI 400
    IAKEAKAPYR SGRTRSWLKV KCTKRQEFVI GGYTPSTKKG RAFASLLLGT 450
    FEGGKLIYRG GVGTGFGEKV MEELAAAFAK RQRPTSPFDQ VPRERSRDAV 500
    WLKPDLVAEV DFAEFTADGH IRHGSFEGLR EDREAKTVKL ETAKPTDAEP 550
    GAAKGKSSAK TRTASPTKGD ADILGVHISH PDRILFEGQG ITKIDLARYY 600
    AVVAERMLPF AADHPVSLVR CPQGGQRQCF FQKHANEGFP EAIREVPITE 650
    SSGETENYMY VHDAKGLVAA VQMGTLEFHI WGATIDRLEK PDRLVFDLDP 700
    DPSVDFATVK AAATTLRDEL AEIGLKTVAM VTGGKGVHVI VPLRPHAEWD 750
    EAKGFAKRLA QTFAERDPEH FVATMSKAKR KGRIFIDWLR NDRGATAIAP 800
    YSTRARAGGP VATPVSWDEL EALDAANTFH IADIIERIEA GTDPWREIGE 850
    IKQSLTKKML NSTIS 865
    Length:865
    Mass (Da):95,657
    Last modified:September 5, 2012 - v1
    Checksum:i0B1F1E741DC7B5AA
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003563 Genomic DNA. Translation: AFL53731.1.
    RefSeqiYP_006400488.1. NC_018000.1.

    Genome annotation databases

    EnsemblBacteriaiAFL53731; AFL53731; USDA257_c52060.
    GeneIDi13065142.
    KEGGisfd:USDA257_c52060.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003563 Genomic DNA. Translation: AFL53731.1 .
    RefSeqi YP_006400488.1. NC_018000.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AFL53731 ; AFL53731 ; USDA257_c52060 .
    GeneIDi 13065142.
    KEGGi sfd:USDA257_c52060.

    Phylogenomic databases

    KOi K01971.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete Genome Sequence of the Broad-Host-Range Strain Sinorhizobium fredii USDA257."
      Schuldes J., Rodriguez Orbegoso M., Schmeisser C., Krishnan H.B., Daniel R., Streit W.R.
      J. Bacteriol. 194:4483-4483(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: USDA 257Imported.

    Entry informationi

    Entry nameiI3XCX5_RHIFR
    AccessioniPrimary (citable) accession number: I3XCX5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 5, 2012
    Last sequence update: September 5, 2012
    Last modified: October 1, 2014
    This is version 14 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3