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I3XCX5

- I3XCX5_RHIFR

UniProt

I3XCX5 - I3XCX5_RHIFR

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Protein
Submitted name:

Putative ATP-dependent DNA ligase YkoU

Gene
ykoU3, USDA257_c52060
Organism
Sinorhizobium fredii USDA 257
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
Putative ATP-dependent DNA ligase YkoUImported (EC:6.5.1.1Imported)
Gene namesi
Name:ykoU3Imported
ORF Names:USDA257_c52060Imported
OrganismiSinorhizobium fredii USDA 257Imported
Taxonomic identifieri1185652 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000006180: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I3XCX5-1 [UniParc]FASTAAdd to Basket

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MAARSEPLSE YNRRRDFSKT REPKGAVART HPGQKRFLVQ KHDATRLHYD    50
FRLEWEGVLK SWAVTRGPSL NPEDKRLAIR TEDHPLAYGD FEGTIPEGEY 100
GGGTVMLWDT GWWEPEDDPE KGLKKGKLAF RLHGSRMKGG WALVRMRPRD 150
GEKRESWLLV KQDDDVASED GESLIKQHVV SARTGRTMDE IAEGRGEKRA 200
RVWHSNKSTA ANLNAGAVSQ DEGRSKRRAR KSSVKPPAFR PPQLATLVTK 250
APAGDDWLNE AKFDGYRLIA AVGGGIARCY TRNGLDWTEK FPTIAAALAE 300
LDCDSALIDG EVVALADQGS NFSALQKALR TGASMRFYAF DLIELDEKDL 350
SRRPLVERKE KLAALLDSLG TTATIQYSEH VRGNGEHILA AICKAGQEGI 400
IAKEAKAPYR SGRTRSWLKV KCTKRQEFVI GGYTPSTKKG RAFASLLLGT 450
FEGGKLIYRG GVGTGFGEKV MEELAAAFAK RQRPTSPFDQ VPRERSRDAV 500
WLKPDLVAEV DFAEFTADGH IRHGSFEGLR EDREAKTVKL ETAKPTDAEP 550
GAAKGKSSAK TRTASPTKGD ADILGVHISH PDRILFEGQG ITKIDLARYY 600
AVVAERMLPF AADHPVSLVR CPQGGQRQCF FQKHANEGFP EAIREVPITE 650
SSGETENYMY VHDAKGLVAA VQMGTLEFHI WGATIDRLEK PDRLVFDLDP 700
DPSVDFATVK AAATTLRDEL AEIGLKTVAM VTGGKGVHVI VPLRPHAEWD 750
EAKGFAKRLA QTFAERDPEH FVATMSKAKR KGRIFIDWLR NDRGATAIAP 800
YSTRARAGGP VATPVSWDEL EALDAANTFH IADIIERIEA GTDPWREIGE 850
IKQSLTKKML NSTIS 865
Length:865
Mass (Da):95,657
Last modified:September 5, 2012 - v1
Checksum:i0B1F1E741DC7B5AA
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003563 Genomic DNA. Translation: AFL53731.1.
RefSeqiYP_006400488.1. NC_018000.1.

Genome annotation databases

EnsemblBacteriaiAFL53731; AFL53731; USDA257_c52060.
GeneIDi13065142.
KEGGisfd:USDA257_c52060.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003563 Genomic DNA. Translation: AFL53731.1 .
RefSeqi YP_006400488.1. NC_018000.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AFL53731 ; AFL53731 ; USDA257_c52060 .
GeneIDi 13065142.
KEGGi sfd:USDA257_c52060.

Phylogenomic databases

KOi K01971.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete Genome Sequence of the Broad-Host-Range Strain Sinorhizobium fredii USDA257."
    Schuldes J., Rodriguez Orbegoso M., Schmeisser C., Krishnan H.B., Daniel R., Streit W.R.
    J. Bacteriol. 194:4483-4483(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: USDA 257Imported.

Entry informationi

Entry nameiI3XCX5_RHIFR
AccessioniPrimary (citable) accession number: I3XCX5
Entry historyi
Integrated into UniProtKB/TrEMBL: September 5, 2012
Last sequence update: September 5, 2012
Last modified: September 3, 2014
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

Similar proteinsi