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I3XCX5 (I3XCX5_RHIFR) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 11. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=6.5.1.1 EMBL AFL53731.1
Gene names
Name:ykoU3 EMBL AFL53731.1
ORF Names:USDA257_c52060 EMBL AFL53731.1
OrganismSinorhizobium fredii USDA 257 [Complete proteome] EMBL AFL53731.1
Taxonomic identifier1185652 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Protein attributes

Sequence length865 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
I3XCX5 [UniParc].

Last modified September 5, 2012. Version 1.
Checksum: 0B1F1E741DC7B5AA

FASTA86595,657
        10         20         30         40         50         60 
MAARSEPLSE YNRRRDFSKT REPKGAVART HPGQKRFLVQ KHDATRLHYD FRLEWEGVLK 

        70         80         90        100        110        120 
SWAVTRGPSL NPEDKRLAIR TEDHPLAYGD FEGTIPEGEY GGGTVMLWDT GWWEPEDDPE 

       130        140        150        160        170        180 
KGLKKGKLAF RLHGSRMKGG WALVRMRPRD GEKRESWLLV KQDDDVASED GESLIKQHVV 

       190        200        210        220        230        240 
SARTGRTMDE IAEGRGEKRA RVWHSNKSTA ANLNAGAVSQ DEGRSKRRAR KSSVKPPAFR 

       250        260        270        280        290        300 
PPQLATLVTK APAGDDWLNE AKFDGYRLIA AVGGGIARCY TRNGLDWTEK FPTIAAALAE 

       310        320        330        340        350        360 
LDCDSALIDG EVVALADQGS NFSALQKALR TGASMRFYAF DLIELDEKDL SRRPLVERKE 

       370        380        390        400        410        420 
KLAALLDSLG TTATIQYSEH VRGNGEHILA AICKAGQEGI IAKEAKAPYR SGRTRSWLKV 

       430        440        450        460        470        480 
KCTKRQEFVI GGYTPSTKKG RAFASLLLGT FEGGKLIYRG GVGTGFGEKV MEELAAAFAK 

       490        500        510        520        530        540 
RQRPTSPFDQ VPRERSRDAV WLKPDLVAEV DFAEFTADGH IRHGSFEGLR EDREAKTVKL 

       550        560        570        580        590        600 
ETAKPTDAEP GAAKGKSSAK TRTASPTKGD ADILGVHISH PDRILFEGQG ITKIDLARYY 

       610        620        630        640        650        660 
AVVAERMLPF AADHPVSLVR CPQGGQRQCF FQKHANEGFP EAIREVPITE SSGETENYMY 

       670        680        690        700        710        720 
VHDAKGLVAA VQMGTLEFHI WGATIDRLEK PDRLVFDLDP DPSVDFATVK AAATTLRDEL 

       730        740        750        760        770        780 
AEIGLKTVAM VTGGKGVHVI VPLRPHAEWD EAKGFAKRLA QTFAERDPEH FVATMSKAKR 

       790        800        810        820        830        840 
KGRIFIDWLR NDRGATAIAP YSTRARAGGP VATPVSWDEL EALDAANTFH IADIIERIEA 

       850        860 
GTDPWREIGE IKQSLTKKML NSTIS 

« Hide

References

[1]"Complete Genome Sequence of the Broad-Host-Range Strain Sinorhizobium fredii USDA257."
Schuldes J., Rodriguez Orbegoso M., Schmeisser C., Krishnan H.B., Daniel R., Streit W.R.
J. Bacteriol. 194:4483-4483(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: USDA 257 EMBL AFL53731.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP003563 Genomic DNA. Translation: AFL53731.1.
RefSeqYP_006400488.1. NC_018000.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFL53731; AFL53731; USDA257_c52060.
GeneID13065142.
KEGGsfd:USDA257_c52060.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameI3XCX5_RHIFR
AccessionPrimary (citable) accession number: I3XCX5
Entry history
Integrated into UniProtKB/TrEMBL: September 5, 2012
Last sequence update: September 5, 2012
Last modified: February 19, 2014
This is version 11 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)