Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

I3X6V0 (I3X6V0_RHIFR) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 12. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
ORF Names:USDA257_c30360 EMBL AFL51606.1
OrganismSinorhizobium fredii USDA 257 [Complete proteome] EMBL AFL51606.1
Taxonomic identifier1185652 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Protein attributes

Sequence length364 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AFL51606.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
I3X6V0 [UniParc].

Last modified September 5, 2012. Version 1.
Checksum: 331A628908C02525

FASTA36440,400
        10         20         30         40         50         60 
MPSPAHRKST KEAGSLRPTA TAKAARGMGS PAAFPLPVST APMEARSATE LPSDVVWQYE 

        70         80         90        100        110        120 
PKWDGFRCLA FKSGEEVDLR AKSGKPLGRF FPEIIALMRQ LDAAQFVVDG ELVIEVDGRL 

       130        140        150        160        170        180 
SFDALQMRLH PAASRVQKLS QQTPARLILF DMLVDTDGAI LTGRPLVARR AALEAFAAEN 

       190        200        210        220        230        240 
SGAAQLELSP FTLDRHEAER WLTSWEAGAT DGVVAKRRDG PYECGERAML KVKRLKTADC 

       250        260        270        280        290        300 
VVGGFRYESD SEEVGSLLLG LYDTDGTLNH VGFTATISDK ERPALTRRLE ALREPPGFTG 

       310        320        330        340        350        360 
KAPGGPSRWS TERSGEWEPV RPELVVEVRF DHVSSRRFRH GTKLMRWRPD KDPRQCTYEQ 


IEPR 

« Hide

References

[1]"Complete Genome Sequence of the Broad-Host-Range Strain Sinorhizobium fredii USDA257."
Schuldes J., Rodriguez Orbegoso M., Schmeisser C., Krishnan H.B., Daniel R., Streit W.R.
J. Bacteriol. 194:4483-4483(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: USDA 257 EMBL AFL51606.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP003563 Genomic DNA. Translation: AFL51606.1.
RefSeqYP_006398363.1. NC_018000.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFL51606; AFL51606; USDA257_c30360.
GeneID13064060.
KEGGsfd:USDA257_c30360.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameI3X6V0_RHIFR
AccessionPrimary (citable) accession number: I3X6V0
Entry history
Integrated into UniProtKB/TrEMBL: September 5, 2012
Last sequence update: September 5, 2012
Last modified: April 16, 2014
This is version 12 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)