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I3X6V0

- I3X6V0_RHIFR

UniProt

I3X6V0 - I3X6V0_RHIFR

Protein
Submitted name:

Putative DNA ligase

Gene

USDA257_c30360

Organism
Sinorhizobium fredii USDA 257
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 14 (01 Oct 2014)
      Sequence version 1 (05 Sep 2012)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative DNA ligaseImported
    Gene namesi
    ORF Names:USDA257_c30360Imported
    OrganismiSinorhizobium fredii USDA 257Imported
    Taxonomic identifieri1185652 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
    ProteomesiUP000006180: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    I3X6V0-1 [UniParc]FASTAAdd to Basket

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    MPSPAHRKST KEAGSLRPTA TAKAARGMGS PAAFPLPVST APMEARSATE    50
    LPSDVVWQYE PKWDGFRCLA FKSGEEVDLR AKSGKPLGRF FPEIIALMRQ 100
    LDAAQFVVDG ELVIEVDGRL SFDALQMRLH PAASRVQKLS QQTPARLILF 150
    DMLVDTDGAI LTGRPLVARR AALEAFAAEN SGAAQLELSP FTLDRHEAER 200
    WLTSWEAGAT DGVVAKRRDG PYECGERAML KVKRLKTADC VVGGFRYESD 250
    SEEVGSLLLG LYDTDGTLNH VGFTATISDK ERPALTRRLE ALREPPGFTG 300
    KAPGGPSRWS TERSGEWEPV RPELVVEVRF DHVSSRRFRH GTKLMRWRPD 350
    KDPRQCTYEQ IEPR 364
    Length:364
    Mass (Da):40,400
    Last modified:September 5, 2012 - v1
    Checksum:i331A628908C02525
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003563 Genomic DNA. Translation: AFL51606.1.
    RefSeqiYP_006398363.1. NC_018000.1.

    Genome annotation databases

    EnsemblBacteriaiAFL51606; AFL51606; USDA257_c30360.
    GeneIDi13064060.
    KEGGisfd:USDA257_c30360.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003563 Genomic DNA. Translation: AFL51606.1 .
    RefSeqi YP_006398363.1. NC_018000.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AFL51606 ; AFL51606 ; USDA257_c30360 .
    GeneIDi 13064060.
    KEGGi sfd:USDA257_c30360.

    Phylogenomic databases

    KOi K01971.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete Genome Sequence of the Broad-Host-Range Strain Sinorhizobium fredii USDA257."
      Schuldes J., Rodriguez Orbegoso M., Schmeisser C., Krishnan H.B., Daniel R., Streit W.R.
      J. Bacteriol. 194:4483-4483(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: USDA 257Imported.

    Entry informationi

    Entry nameiI3X6V0_RHIFR
    AccessioniPrimary (citable) accession number: I3X6V0
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 5, 2012
    Last sequence update: September 5, 2012
    Last modified: October 1, 2014
    This is version 14 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3