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I3X6V0

- I3X6V0_RHIFR

UniProt

I3X6V0 - I3X6V0_RHIFR

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Protein
Submitted name:

Putative DNA ligase

Gene
USDA257_c30360
Organism
Sinorhizobium fredii USDA 257
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
Putative DNA ligaseImported
Gene namesi
ORF Names:USDA257_c30360Imported
OrganismiSinorhizobium fredii USDA 257Imported
Taxonomic identifieri1185652 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000006180: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I3X6V0-1 [UniParc]FASTAAdd to Basket

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MPSPAHRKST KEAGSLRPTA TAKAARGMGS PAAFPLPVST APMEARSATE    50
LPSDVVWQYE PKWDGFRCLA FKSGEEVDLR AKSGKPLGRF FPEIIALMRQ 100
LDAAQFVVDG ELVIEVDGRL SFDALQMRLH PAASRVQKLS QQTPARLILF 150
DMLVDTDGAI LTGRPLVARR AALEAFAAEN SGAAQLELSP FTLDRHEAER 200
WLTSWEAGAT DGVVAKRRDG PYECGERAML KVKRLKTADC VVGGFRYESD 250
SEEVGSLLLG LYDTDGTLNH VGFTATISDK ERPALTRRLE ALREPPGFTG 300
KAPGGPSRWS TERSGEWEPV RPELVVEVRF DHVSSRRFRH GTKLMRWRPD 350
KDPRQCTYEQ IEPR 364
Length:364
Mass (Da):40,400
Last modified:September 5, 2012 - v1
Checksum:i331A628908C02525
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003563 Genomic DNA. Translation: AFL51606.1.
RefSeqiYP_006398363.1. NC_018000.1.

Genome annotation databases

EnsemblBacteriaiAFL51606; AFL51606; USDA257_c30360.
GeneIDi13064060.
KEGGisfd:USDA257_c30360.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003563 Genomic DNA. Translation: AFL51606.1 .
RefSeqi YP_006398363.1. NC_018000.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AFL51606 ; AFL51606 ; USDA257_c30360 .
GeneIDi 13064060.
KEGGi sfd:USDA257_c30360.

Phylogenomic databases

KOi K01971.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete Genome Sequence of the Broad-Host-Range Strain Sinorhizobium fredii USDA257."
    Schuldes J., Rodriguez Orbegoso M., Schmeisser C., Krishnan H.B., Daniel R., Streit W.R.
    J. Bacteriol. 194:4483-4483(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: USDA 257Imported.

Entry informationi

Entry nameiI3X6V0_RHIFR
AccessioniPrimary (citable) accession number: I3X6V0
Entry historyi
Integrated into UniProtKB/TrEMBL: September 5, 2012
Last sequence update: September 5, 2012
Last modified: September 3, 2014
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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