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Protein
Submitted name:

Putative DNA ligase

Gene

USDA257_c30360

Organism
Sinorhizobium fredii USDA 257
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
Putative DNA ligaseImported
Gene namesi
ORF Names:USDA257_c30360Imported
OrganismiSinorhizobium fredii USDA 257Imported
Taxonomic identifieri1185652 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000006180: Chromosome

Family & Domainsi

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I3X6V0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPSPAHRKST KEAGSLRPTA TAKAARGMGS PAAFPLPVST APMEARSATE
60 70 80 90 100
LPSDVVWQYE PKWDGFRCLA FKSGEEVDLR AKSGKPLGRF FPEIIALMRQ
110 120 130 140 150
LDAAQFVVDG ELVIEVDGRL SFDALQMRLH PAASRVQKLS QQTPARLILF
160 170 180 190 200
DMLVDTDGAI LTGRPLVARR AALEAFAAEN SGAAQLELSP FTLDRHEAER
210 220 230 240 250
WLTSWEAGAT DGVVAKRRDG PYECGERAML KVKRLKTADC VVGGFRYESD
260 270 280 290 300
SEEVGSLLLG LYDTDGTLNH VGFTATISDK ERPALTRRLE ALREPPGFTG
310 320 330 340 350
KAPGGPSRWS TERSGEWEPV RPELVVEVRF DHVSSRRFRH GTKLMRWRPD
360
KDPRQCTYEQ IEPR
Length:364
Mass (Da):40,400
Last modified:September 5, 2012 - v1
Checksum:i331A628908C02525
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003563 Genomic DNA. Translation: AFL51606.1.
RefSeqiWP_014763768.1. NC_018000.1.
YP_006398363.1. NC_018000.1.

Genome annotation databases

EnsemblBacteriaiAFL51606; AFL51606; USDA257_c30360.
GeneIDi13064060.
KEGGisfd:USDA257_c30360.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003563 Genomic DNA. Translation: AFL51606.1.
RefSeqiWP_014763768.1. NC_018000.1.
YP_006398363.1. NC_018000.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAFL51606; AFL51606; USDA257_c30360.
GeneIDi13064060.
KEGGisfd:USDA257_c30360.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete Genome Sequence of the Broad-Host-Range Strain Sinorhizobium fredii USDA257."
    Schuldes J., Rodriguez Orbegoso M., Schmeisser C., Krishnan H.B., Daniel R., Streit W.R.
    J. Bacteriol. 194:4483-4483(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: USDA 257Imported.

Entry informationi

Entry nameiI3X6V0_RHIFR
AccessioniPrimary (citable) accession number: I3X6V0
Entry historyi
Integrated into UniProtKB/TrEMBL: September 5, 2012
Last sequence update: September 5, 2012
Last modified: March 4, 2015
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.