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I3X2Z1

- I3X2Z1_RHIFR

UniProt

I3X2Z1 - I3X2Z1_RHIFR

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Protein
Submitted name: Putative ATP-dependent DNA ligase YkoU
Gene
ykoU2, USDA257_c16580
Organism
Sinorhizobium fredii USDA 257
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC
Complete GO annotation...

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
Putative ATP-dependent DNA ligase YkoUImported (EC:6.5.1.1Imported)
Gene namesi
Name:ykoU2Imported
ORF Names:USDA257_c16580Imported
OrganismiSinorhizobium fredii USDA 257Imported
Taxonomic identifieri1185652 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000006180: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I3X2Z1-1 [UniParc]FASTAAdd to Basket

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MGLDLYREKR DFDSTPEPKG RKARRAGNSF VVQKHDATRL HYDFRLEMDG    50
VLKSWAVTKG PSLIPGEKRL AVHVEDHPLE YGDFEGTIPK GEYGGGTVIL 100
WDRGTWSPIG DARRGYAKGH LDFELSGEKL GGRWHLVRMA GKPREKRENW 150
LLIKGDDQAA RSEEDPDILE ERPESVLTGR EIKDVAGEEP GWSSKTGRIR 200
KRARSKKTTA PQEQEPEAVM NVPDPSKIKG AKAAALPDFV EPSLATLVSS 250
APAGERWLHE IKFDGYRLQA RIEAGRVRLL TRSGLDWTKR FGKALVSALQ 300
ALPVGTALID GEIVVETGSG ASDFSGLQAD LSEGRSDRFR FYVFDLLYLD 350
GYDLRALPLI KRKELLDQLI GEDDGIVRFS SHFEEEGRLV LSHACRLSLE 400
GIVSKLRDAP YRTGRNKSWV KSKCSARQEF VVAGYVPSTT SRKAIGSLVL 450
GVYDGDKLDH VGRVGTGFTA ALAEDLLKRL DRLRTSESPF AARLSAEDAR 500
QVRYVKPELV AEVEFRAWTA DGHLRHASFR GLREDRLAGE IVRETPKSTG 550
TQPKPPRRTV KLTHPDRLYW PDEGVTKEGL ADYYAEVWRF IGPHIVGRPL 600
ALVRCPNGIT GEQFFQKHAW KGLNPNIVLV NDPKEPPDEQ LLSIRDLDGL 650
IALVQSAVLE IHPWGSTVAD WEKPDTIIMD LDPGEDVPFE AVIDAAFETA 700
DRLKAAGLVP FVKTSGGKGL HVVAPLIPKA EWPAVKAFTK SIADAMASDS 750
SDRFVSTITK SKRRGKILVD YLRNQRGATA VAAYSTRARP GAAVSMPLSW 800
DELAPGIGPA YFTVENTPTR LQSLSADPWA DFRAAAIPLK EPKAGRRKAA 850
Length:850
Mass (Da):94,080
Last modified:September 5, 2012 - v1
Checksum:i172827A3D2947FE4
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003563 Genomic DNA. Translation: AFL50247.1.
RefSeqiYP_006397004.1. NC_018000.1.

Genome annotation databases

EnsemblBacteriaiAFL50247; AFL50247; USDA257_c16580.
GeneIDi13063366.
KEGGisfd:USDA257_c16580.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003563 Genomic DNA. Translation: AFL50247.1 .
RefSeqi YP_006397004.1. NC_018000.1.

3D structure databases

ModBasei Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AFL50247 ; AFL50247 ; USDA257_c16580 .
GeneIDi 13063366.
KEGGi sfd:USDA257_c16580.

Phylogenomic databases

KOi K01971.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete Genome Sequence of the Broad-Host-Range Strain Sinorhizobium fredii USDA257."
    Schuldes J., Rodriguez Orbegoso M., Schmeisser C., Krishnan H.B., Daniel R., Streit W.R.
    J. Bacteriol. 194:4483-4483(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: USDA 257Imported.

Entry informationi

Entry nameiI3X2Z1_RHIFR
AccessioniPrimary (citable) accession number: I3X2Z1
Entry historyi
Integrated into UniProtKB/TrEMBL: September 5, 2012
Last sequence update: September 5, 2012
Last modified: September 3, 2014
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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