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I3X2Z1

- I3X2Z1_RHIFR

UniProt

I3X2Z1 - I3X2Z1_RHIFR

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Protein
Submitted name:

Putative ATP-dependent DNA ligase YkoU

Gene

ykoU2

Organism
Sinorhizobium fredii USDA 257
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
Putative ATP-dependent DNA ligase YkoUImported (EC:6.5.1.1Imported)
Gene namesi
Name:ykoU2Imported
ORF Names:USDA257_c16580Imported
OrganismiSinorhizobium fredii USDA 257Imported
Taxonomic identifieri1185652 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000006180: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I3X2Z1-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MGLDLYREKR DFDSTPEPKG RKARRAGNSF VVQKHDATRL HYDFRLEMDG
60 70 80 90 100
VLKSWAVTKG PSLIPGEKRL AVHVEDHPLE YGDFEGTIPK GEYGGGTVIL
110 120 130 140 150
WDRGTWSPIG DARRGYAKGH LDFELSGEKL GGRWHLVRMA GKPREKRENW
160 170 180 190 200
LLIKGDDQAA RSEEDPDILE ERPESVLTGR EIKDVAGEEP GWSSKTGRIR
210 220 230 240 250
KRARSKKTTA PQEQEPEAVM NVPDPSKIKG AKAAALPDFV EPSLATLVSS
260 270 280 290 300
APAGERWLHE IKFDGYRLQA RIEAGRVRLL TRSGLDWTKR FGKALVSALQ
310 320 330 340 350
ALPVGTALID GEIVVETGSG ASDFSGLQAD LSEGRSDRFR FYVFDLLYLD
360 370 380 390 400
GYDLRALPLI KRKELLDQLI GEDDGIVRFS SHFEEEGRLV LSHACRLSLE
410 420 430 440 450
GIVSKLRDAP YRTGRNKSWV KSKCSARQEF VVAGYVPSTT SRKAIGSLVL
460 470 480 490 500
GVYDGDKLDH VGRVGTGFTA ALAEDLLKRL DRLRTSESPF AARLSAEDAR
510 520 530 540 550
QVRYVKPELV AEVEFRAWTA DGHLRHASFR GLREDRLAGE IVRETPKSTG
560 570 580 590 600
TQPKPPRRTV KLTHPDRLYW PDEGVTKEGL ADYYAEVWRF IGPHIVGRPL
610 620 630 640 650
ALVRCPNGIT GEQFFQKHAW KGLNPNIVLV NDPKEPPDEQ LLSIRDLDGL
660 670 680 690 700
IALVQSAVLE IHPWGSTVAD WEKPDTIIMD LDPGEDVPFE AVIDAAFETA
710 720 730 740 750
DRLKAAGLVP FVKTSGGKGL HVVAPLIPKA EWPAVKAFTK SIADAMASDS
760 770 780 790 800
SDRFVSTITK SKRRGKILVD YLRNQRGATA VAAYSTRARP GAAVSMPLSW
810 820 830 840 850
DELAPGIGPA YFTVENTPTR LQSLSADPWA DFRAAAIPLK EPKAGRRKAA
Length:850
Mass (Da):94,080
Last modified:September 5, 2012 - v1
Checksum:i172827A3D2947FE4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003563 Genomic DNA. Translation: AFL50247.1.
RefSeqiYP_006397004.1. NC_018000.1.

Genome annotation databases

EnsemblBacteriaiAFL50247; AFL50247; USDA257_c16580.
GeneIDi13063366.
KEGGisfd:USDA257_c16580.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003563 Genomic DNA. Translation: AFL50247.1 .
RefSeqi YP_006397004.1. NC_018000.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AFL50247 ; AFL50247 ; USDA257_c16580 .
GeneIDi 13063366.
KEGGi sfd:USDA257_c16580.

Phylogenomic databases

KOi K01971.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete Genome Sequence of the Broad-Host-Range Strain Sinorhizobium fredii USDA257."
    Schuldes J., Rodriguez Orbegoso M., Schmeisser C., Krishnan H.B., Daniel R., Streit W.R.
    J. Bacteriol. 194:4483-4483(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: USDA 257Imported.

Entry informationi

Entry nameiI3X2Z1_RHIFR
AccessioniPrimary (citable) accession number: I3X2Z1
Entry historyi
Integrated into UniProtKB/TrEMBL: September 5, 2012
Last sequence update: September 5, 2012
Last modified: October 1, 2014
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3