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I3X2Z1 (I3X2Z1_RHIFR) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 12. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=6.5.1.1 EMBL AFL50247.1
Gene names
Name:ykoU2 EMBL AFL50247.1
ORF Names:USDA257_c16580 EMBL AFL50247.1
OrganismSinorhizobium fredii USDA 257 [Complete proteome] EMBL AFL50247.1
Taxonomic identifier1185652 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Protein attributes

Sequence length850 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AFL50247.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
I3X2Z1 [UniParc].

Last modified September 5, 2012. Version 1.
Checksum: 172827A3D2947FE4

FASTA85094,080
        10         20         30         40         50         60 
MGLDLYREKR DFDSTPEPKG RKARRAGNSF VVQKHDATRL HYDFRLEMDG VLKSWAVTKG 

        70         80         90        100        110        120 
PSLIPGEKRL AVHVEDHPLE YGDFEGTIPK GEYGGGTVIL WDRGTWSPIG DARRGYAKGH 

       130        140        150        160        170        180 
LDFELSGEKL GGRWHLVRMA GKPREKRENW LLIKGDDQAA RSEEDPDILE ERPESVLTGR 

       190        200        210        220        230        240 
EIKDVAGEEP GWSSKTGRIR KRARSKKTTA PQEQEPEAVM NVPDPSKIKG AKAAALPDFV 

       250        260        270        280        290        300 
EPSLATLVSS APAGERWLHE IKFDGYRLQA RIEAGRVRLL TRSGLDWTKR FGKALVSALQ 

       310        320        330        340        350        360 
ALPVGTALID GEIVVETGSG ASDFSGLQAD LSEGRSDRFR FYVFDLLYLD GYDLRALPLI 

       370        380        390        400        410        420 
KRKELLDQLI GEDDGIVRFS SHFEEEGRLV LSHACRLSLE GIVSKLRDAP YRTGRNKSWV 

       430        440        450        460        470        480 
KSKCSARQEF VVAGYVPSTT SRKAIGSLVL GVYDGDKLDH VGRVGTGFTA ALAEDLLKRL 

       490        500        510        520        530        540 
DRLRTSESPF AARLSAEDAR QVRYVKPELV AEVEFRAWTA DGHLRHASFR GLREDRLAGE 

       550        560        570        580        590        600 
IVRETPKSTG TQPKPPRRTV KLTHPDRLYW PDEGVTKEGL ADYYAEVWRF IGPHIVGRPL 

       610        620        630        640        650        660 
ALVRCPNGIT GEQFFQKHAW KGLNPNIVLV NDPKEPPDEQ LLSIRDLDGL IALVQSAVLE 

       670        680        690        700        710        720 
IHPWGSTVAD WEKPDTIIMD LDPGEDVPFE AVIDAAFETA DRLKAAGLVP FVKTSGGKGL 

       730        740        750        760        770        780 
HVVAPLIPKA EWPAVKAFTK SIADAMASDS SDRFVSTITK SKRRGKILVD YLRNQRGATA 

       790        800        810        820        830        840 
VAAYSTRARP GAAVSMPLSW DELAPGIGPA YFTVENTPTR LQSLSADPWA DFRAAAIPLK 

       850 
EPKAGRRKAA 

« Hide

References

[1]"Complete Genome Sequence of the Broad-Host-Range Strain Sinorhizobium fredii USDA257."
Schuldes J., Rodriguez Orbegoso M., Schmeisser C., Krishnan H.B., Daniel R., Streit W.R.
J. Bacteriol. 194:4483-4483(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: USDA 257 EMBL AFL50247.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP003563 Genomic DNA. Translation: AFL50247.1.
RefSeqYP_006397004.1. NC_018000.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFL50247; AFL50247; USDA257_c16580.
GeneID13063366.
KEGGsfd:USDA257_c16580.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameI3X2Z1_RHIFR
AccessionPrimary (citable) accession number: I3X2Z1
Entry history
Integrated into UniProtKB/TrEMBL: September 5, 2012
Last sequence update: September 5, 2012
Last modified: April 16, 2014
This is version 12 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)