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I3X2Z1

- I3X2Z1_RHIFR

UniProt

I3X2Z1 - I3X2Z1_RHIFR

Protein
Submitted name:

Putative ATP-dependent DNA ligase YkoU

Gene

ykoU2

Organism
Sinorhizobium fredii USDA 257
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 14 (01 Oct 2014)
      Sequence version 1 (05 Sep 2012)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative ATP-dependent DNA ligase YkoUImported (EC:6.5.1.1Imported)
    Gene namesi
    Name:ykoU2Imported
    ORF Names:USDA257_c16580Imported
    OrganismiSinorhizobium fredii USDA 257Imported
    Taxonomic identifieri1185652 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
    ProteomesiUP000006180: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    I3X2Z1-1 [UniParc]FASTAAdd to Basket

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    MGLDLYREKR DFDSTPEPKG RKARRAGNSF VVQKHDATRL HYDFRLEMDG    50
    VLKSWAVTKG PSLIPGEKRL AVHVEDHPLE YGDFEGTIPK GEYGGGTVIL 100
    WDRGTWSPIG DARRGYAKGH LDFELSGEKL GGRWHLVRMA GKPREKRENW 150
    LLIKGDDQAA RSEEDPDILE ERPESVLTGR EIKDVAGEEP GWSSKTGRIR 200
    KRARSKKTTA PQEQEPEAVM NVPDPSKIKG AKAAALPDFV EPSLATLVSS 250
    APAGERWLHE IKFDGYRLQA RIEAGRVRLL TRSGLDWTKR FGKALVSALQ 300
    ALPVGTALID GEIVVETGSG ASDFSGLQAD LSEGRSDRFR FYVFDLLYLD 350
    GYDLRALPLI KRKELLDQLI GEDDGIVRFS SHFEEEGRLV LSHACRLSLE 400
    GIVSKLRDAP YRTGRNKSWV KSKCSARQEF VVAGYVPSTT SRKAIGSLVL 450
    GVYDGDKLDH VGRVGTGFTA ALAEDLLKRL DRLRTSESPF AARLSAEDAR 500
    QVRYVKPELV AEVEFRAWTA DGHLRHASFR GLREDRLAGE IVRETPKSTG 550
    TQPKPPRRTV KLTHPDRLYW PDEGVTKEGL ADYYAEVWRF IGPHIVGRPL 600
    ALVRCPNGIT GEQFFQKHAW KGLNPNIVLV NDPKEPPDEQ LLSIRDLDGL 650
    IALVQSAVLE IHPWGSTVAD WEKPDTIIMD LDPGEDVPFE AVIDAAFETA 700
    DRLKAAGLVP FVKTSGGKGL HVVAPLIPKA EWPAVKAFTK SIADAMASDS 750
    SDRFVSTITK SKRRGKILVD YLRNQRGATA VAAYSTRARP GAAVSMPLSW 800
    DELAPGIGPA YFTVENTPTR LQSLSADPWA DFRAAAIPLK EPKAGRRKAA 850
    Length:850
    Mass (Da):94,080
    Last modified:September 5, 2012 - v1
    Checksum:i172827A3D2947FE4
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003563 Genomic DNA. Translation: AFL50247.1.
    RefSeqiYP_006397004.1. NC_018000.1.

    Genome annotation databases

    EnsemblBacteriaiAFL50247; AFL50247; USDA257_c16580.
    GeneIDi13063366.
    KEGGisfd:USDA257_c16580.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003563 Genomic DNA. Translation: AFL50247.1 .
    RefSeqi YP_006397004.1. NC_018000.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AFL50247 ; AFL50247 ; USDA257_c16580 .
    GeneIDi 13063366.
    KEGGi sfd:USDA257_c16580.

    Phylogenomic databases

    KOi K01971.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete Genome Sequence of the Broad-Host-Range Strain Sinorhizobium fredii USDA257."
      Schuldes J., Rodriguez Orbegoso M., Schmeisser C., Krishnan H.B., Daniel R., Streit W.R.
      J. Bacteriol. 194:4483-4483(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: USDA 257Imported.

    Entry informationi

    Entry nameiI3X2Z1_RHIFR
    AccessioniPrimary (citable) accession number: I3X2Z1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 5, 2012
    Last sequence update: September 5, 2012
    Last modified: October 1, 2014
    This is version 14 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3