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I3WHS4 (I3WHS4_BIFBI) Unreviewed, UniProtKB/TrEMBL

Last modified January 22, 2014. Version 13. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
ORF Names:BBB_0844 EMBL AFL04437.1
OrganismBifidobacterium bifidum BGN4 [Complete proteome] EMBL AFL04437.1
Taxonomic identifier484020 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeBifidobacterialesBifidobacteriaceaeBifidobacterium

Protein attributes

Sequence length516 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
I3WHS4 [UniParc].

Last modified September 5, 2012. Version 1.
Checksum: E49EA8094994FF83

FASTA51657,389
        10         20         30         40         50         60 
MNARHLRQVD IVRAAQASGV KLGKSHISQY VSGKTTPRAD TLRFLADTLQ VDEQWLLGHD 

        70         80         90        100        110        120 
RGRPDMPAQP KRVSDNPGGR ADAPRTPSPQ TPSSQAPAPQ TTSPSHEPEG TPMRHFNKST 

       130        140        150        160        170        180 
KLDNVLYDVR GPVVDEAARM EQSGMHVLKL NIGNPAPFGF RTPDEVVYDM SRQLSDTEGY 

       190        200        210        220        230        240 
SASKGLFSAR KAIMQYAQLK NLPNVGIEDI YTGNGVSELI NLSLSALLDN GDEVLVPSPD 

       250        260        270        280        290        300 
YPLWTACVNL AGGTAVHYVC DEESEWYPDI DDMRSKITDR TVAIVLINPN NPTGALYPKE 

       310        320        330        340        350        360 
VLQQIVDLAR EHQLMIFSDE IYDRLVMDGL QHVSIASMAP DLFCVTFSGL SKSHMIAGYR 

       370        380        390        400        410        420 
IGWMVLSGNK SIAKDYVEGI NMLTNMRICS NVPAQSIVQT ALGGHQSVND YIVPGGRLYE 

       430        440        450        460        470        480 
QREYIYNALN SIPGVTAVKP KAAFYIFPKL DVKKFNITDD EQFALDLLHD KRILITRGGG 

       490        500        510 
FNWHEPDHFR IVYLPRIEVL KDATEKLTDF LSCYRQ 

« Hide

References

[1]"Complete Genome Sequence of the Probiotic Bacterium Bifidobacterium bifidum Strain BGN4."
Yu D.S., Jeong H., Lee D.H., Kwon S.K., Song J.Y., Kim B.K., Park M.S., Ji G.E., Oh T.K., Kim J.F.
J. Bacteriol. 194:4757-4758(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BGN4 EMBL AFL04437.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001361 Genomic DNA. Translation: AFL04437.1.
RefSeqYP_006394316.1. NC_017999.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFL04437; AFL04437; BBB_0844.
GeneID13069833.
KEGGbbf:BBB_0844.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK14260.

Enzyme and pathway databases

BioCycBBIF484020:GL96-866-MONOMER.

Family and domain databases

Gene3D1.10.260.40. 1 hit.
3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProIPR004839. Aminotransferase_I/II.
IPR001387. Cro/C1-type_HTH.
IPR010982. Lambda_DNA-bd_dom.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamPF00155. Aminotran_1_2. 1 hit.
PF01381. HTH_3. 1 hit.
[Graphical view]
SMARTSM00530. HTH_XRE. 1 hit.
[Graphical view]
SUPFAMSSF47413. SSF47413. 1 hit.
SSF53383. SSF53383. 1 hit.
ProtoNetSearch...

Entry information

Entry nameI3WHS4_BIFBI
AccessionPrimary (citable) accession number: I3WHS4
Entry history
Integrated into UniProtKB/TrEMBL: September 5, 2012
Last sequence update: September 5, 2012
Last modified: January 22, 2014
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)