Parallel beta-helix repeat protein - Thermoanaerobacterium saccharolyticum (strain DSM 8691 / JW/SL-YS485)

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I3VTW0 (I3VTW0_THESW) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 9. History...

Clusters with 100%, 90%, 50% identity |

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

Names and origin

Protein names

Submitted name:
Parallel beta-helix repeat protein EMBL AFK85955.1

Gene names

Ordered Locus Names:

Tsac_0939 EMBL AFK85955.1

Organism

Thermoanaerobacterium saccharolyticum (strain DSM 8691 / JW/SL-YS485) [Complete proteome] [HAMAP] EMBL AFK85955.1

Taxonomic identifier

Taxonomic lineage

Bacteria › Firmicutes › Clostridia › Thermoanaerobacterales › Thermoanaerobacterales Family III. Incertae Sedis › Thermoanaerobacterium ›

Protein attributes

Sequence length	638 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Technical term	3D-structure PDB 3VSU PDB 3VST PDB 3VSV Complete proteome
Gene Ontology (GO)
None. [Check GOA]

Sequences

Sequence

Length

Mass (Da)

Tools

I3VTW0 [UniParc].

Last modified September 5, 2012. Version 1.
Checksum: 6C0A94703E599F8C
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638

72,755

        10         20         30         40         50         60 
MEYHVAKTGS DEGKGTLKDP FLTINKAASV AMAGDTIIVH EGVYREWVKP KYKGLSDKRR 

        70         80         90        100        110        120 
ITYKAAEGEK VVIKGSERIQ SWQRVEGNVW RCQLPNSFFG EFNPYKEEVF GDWLLTVNEK 

       130        140        150        160        170        180 
KHLGDVYLNG MSFYEVTNYE DLFNPQLRTE VLDHWTQKIV PIKNAEQTKY VWYAEVDREK 

       190        200        210        220        230        240 
TTIYANFQGA DPNEEFVEIN VRRSCFYPVE TGIDYITVKG FEMAHAATPW APPTADQPGL 

       250        260        270        280        290        300 
IGPNWSKGWI IEDNIIHDAK CSAISIGKEA TTGNNYRSIR KDKPGYQYQL EAVFNAKRNG 

       310        320        330        340        350        360 
WSKEKIGSHI IRNNTIYDCG QNAIVGHLGG VFSEIYNNHI YNIALKREFY GHEIAGIKLH 

       370        380        390        400        410        420 
AAIDVQIHHN RIHDCSLGLW LDWEAQGTRV SKNLFYNNNR DVFVEVSHGP YLVDHNILSS 

       430        440        450        460        470        480 
EYAIDNMSQG GAYINNLIAG KMNQRKVLNR STQYHLPHST EVAGFAFVYG GDDRFYNNIF 

       490        500        510        520        530        540 
IGKEGLENVG TSHYNNCTTS LEEYIEKVNE VPGDLGEFER VEQPVYINKN AYFNGAEPFE 

       550        560        570        580        590        600 
KEKDNLVKKD FDPKLAIIDE GDEVYLSLQL PDEFENIVGD IHSTKTLERV RIVDAEYESP 

       610        620        630 
DGKELVLDTD YLDAKKPENS SIGPIALLKK GNNYIKVW

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Thermoanaerobacterium saccharolyticum JW/SL-YS485." Brown S.D., Land M.L., Herring C.D. Submitted (DEC-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 8691 / JW/SL-YS485.
[2]	"The substrate/product-binding modes of a novel GH120 ?-xylosidase (XylC) from Thermoanaerobacterium saccharolyticum JW/SL-YS485." Huang C.H., Sun Y., Ko T.P., Chen C.C., Zheng Y., Chan H.C., Pang X., Wiegel J., Shao W., Guo R.T. Biochem. J. 448:401-407(2012) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (1.48 ANGSTROMS).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

CP003184 Genomic DNA. Translation: AFK85955.1.

RefSeq

YP_006391554.1. NC_017992.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
3VST	X-ray	1.75	A/B/C/D	1-638	[»]
3VSU	X-ray	2.05	A/B/C/D	1-638	[»]
3VSV	X-ray	1.48	A/B/C/D	1-638	[»]

ProteinModelPortal

ModBase

Protocols and materials databases

StructuralBiologyKnowledgebase

Genome annotation databases

EnsemblBacteria

AFK85955; AFK85955; Tsac_0939.

GeneID

KEGG

Organism-specific databases

CMR

Enzyme and pathway databases

BioCyc

TSAC1094508:GLMA-950-MONOMER.

Family and domain databases

Gene3D

2.160.20.10. 3 hits.

InterPro

IPR006626. PbH1.
IPR012334. Pectin_lyas_fold.
IPR011050. Pectin_lyase_fold/virulence.
[Graphical view]

SMART

SM00710. PbH1. 5 hits.
[Graphical view]

SUPFAM

SSF51126. Pectin_lyas_like. 1 hit.

ProtoNet

Entry information

Entry name

I3VTW0_THESW

Accession

Primary (citable) accession number: I3VTW0

Entry history

Integrated into UniProtKB/TrEMBL:	September 5, 2012
Last sequence update:	September 5, 2012
Last modified:	May 29, 2013
This is version 9 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info