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I3V4C3

- I3V4C3_PSEPU

UniProt

I3V4C3 - I3V4C3_PSEPU

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

YSA_10746

Organism
Pseudomonas putida ND6
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 15 (01 Oct 2014)
      Sequence version 1 (05 Sep 2012)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciPPUT231023:GLIT-5899-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported
    Gene namesi
    ORF Names:YSA_10746Imported
    OrganismiPseudomonas putida ND6Imported
    Taxonomic identifieri231023 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
    ProteomesiUP000005268: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    I3V4C3-1 [UniParc]FASTAAdd to Basket

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    MAKPLQEYAR KRDFNATPEP SGERKRGKRA HALQFCIQKH DASHLHYDFR    50
    LELDGTLKSW AIPKGPSLDP KVRRLAVHVE DHPLDYADFE GHIPEGHYGA 100
    GDVIVWDRGI WEPEGDAHEA YVKGKLRFRL QGEKLAGVWN LFRTHLAGKK 150
    EQWMLVKSHD AQARSETEYS IVEALPDSVL SERTLVPRKS AAKKATAPRS 200
    SRKRADKVQA APLPAQLQPQ LATLVDSPPS GDWRYEVKFD GYRILARIEG 250
    QDIRLFTRNG HDWSSKMPRQ VAALRALGID SAWLDGEMVV ADENGMADFQ 300
    ALQNAFDTEH DERITYYLFD LPFLGGQDLR QLPLQHRRDT LRQLLEHNHS 350
    DFIKYSADFD EPVESLLDSA CRLKLEGLIG KRADSVYSGR RSPDWIKLKC 400
    KQRQEFVIVG YTDPKGSRSG FGALLLALHD NERGELRYAG KVGTGFNTTT 450
    LASIHTRLKP LEIASPALPS PPAGAEARGV HWLRPQLLAE VAFAQMTRDG 500
    IVRHSVFHGL RDDKAATAID LERAMPAKTV SNRNKQAKAS ENLGELRLTH 550
    PDRVIDPTTG VTKREVAEYY AGISQWILPQ LKHRPVALVR APDGLGGELF 600
    FQKNAGQLHI PNVLSYEKAE AGQAAMVINR PDTLLGAVQM NTLELHTWNA 650
    TDKDFDKPDR FVLDLDPDPA LPWKAMVEAT QLALTLLDEL GLKVFLKTSG 700
    GKGIHVVVPL TRRAGWDEVK DFSHAIVNYL AKLFPERLSA VSGPKNRVGR 750
    IFIDYLRNGK GATTACAYSL RARDGLPVSV PIWREELAQI KAANQWNITN 800
    LHERLAEVDD PWADMGKVRQ SITARIRKQL GLE 833
    Length:833
    Mass (Da):93,443
    Last modified:September 5, 2012 - v1
    Checksum:iED524CD54B29CA10
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003588 Genomic DNA. Translation: AFK72594.1.
    RefSeqiWP_014756706.1. NC_017986.1.
    YP_006389709.1. NC_017986.1.

    Genome annotation databases

    EnsemblBacteriaiAFK72594; AFK72594; YSA_10746.
    GeneIDi12989883.
    KEGGippi:YSA_10746.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003588 Genomic DNA. Translation: AFK72594.1 .
    RefSeqi WP_014756706.1. NC_017986.1.
    YP_006389709.1. NC_017986.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AFK72594 ; AFK72594 ; YSA_10746 .
    GeneIDi 12989883.
    KEGGi ppi:YSA_10746.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci PPUT231023:GLIT-5899-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete Genome Sequence of the Naphthalene-Degrading Pseudomonas putida Strain ND6."
      Li S., Zhao H., Li Y., Niu S., Cai B.
      J. Bacteriol. 194:5154-5155(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ND6Imported.

    Entry informationi

    Entry nameiI3V4C3_PSEPU
    AccessioniPrimary (citable) accession number: I3V4C3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 5, 2012
    Last sequence update: September 5, 2012
    Last modified: October 1, 2014
    This is version 15 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3