SubmitCancel

Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

I3V4C3

- I3V4C3_PSEPU

UniProt

I3V4C3 - I3V4C3_PSEPU

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Submitted name:

ATP-dependent DNA ligase

Gene
YSA_10746
Organism
Pseudomonas putida ND6
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPPUT231023:GLIT-5899-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
ORF Names:YSA_10746Imported
OrganismiPseudomonas putida ND6Imported
Taxonomic identifieri231023 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000005268: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I3V4C3-1 [UniParc]FASTAAdd to Basket

« Hide

MAKPLQEYAR KRDFNATPEP SGERKRGKRA HALQFCIQKH DASHLHYDFR    50
LELDGTLKSW AIPKGPSLDP KVRRLAVHVE DHPLDYADFE GHIPEGHYGA 100
GDVIVWDRGI WEPEGDAHEA YVKGKLRFRL QGEKLAGVWN LFRTHLAGKK 150
EQWMLVKSHD AQARSETEYS IVEALPDSVL SERTLVPRKS AAKKATAPRS 200
SRKRADKVQA APLPAQLQPQ LATLVDSPPS GDWRYEVKFD GYRILARIEG 250
QDIRLFTRNG HDWSSKMPRQ VAALRALGID SAWLDGEMVV ADENGMADFQ 300
ALQNAFDTEH DERITYYLFD LPFLGGQDLR QLPLQHRRDT LRQLLEHNHS 350
DFIKYSADFD EPVESLLDSA CRLKLEGLIG KRADSVYSGR RSPDWIKLKC 400
KQRQEFVIVG YTDPKGSRSG FGALLLALHD NERGELRYAG KVGTGFNTTT 450
LASIHTRLKP LEIASPALPS PPAGAEARGV HWLRPQLLAE VAFAQMTRDG 500
IVRHSVFHGL RDDKAATAID LERAMPAKTV SNRNKQAKAS ENLGELRLTH 550
PDRVIDPTTG VTKREVAEYY AGISQWILPQ LKHRPVALVR APDGLGGELF 600
FQKNAGQLHI PNVLSYEKAE AGQAAMVINR PDTLLGAVQM NTLELHTWNA 650
TDKDFDKPDR FVLDLDPDPA LPWKAMVEAT QLALTLLDEL GLKVFLKTSG 700
GKGIHVVVPL TRRAGWDEVK DFSHAIVNYL AKLFPERLSA VSGPKNRVGR 750
IFIDYLRNGK GATTACAYSL RARDGLPVSV PIWREELAQI KAANQWNITN 800
LHERLAEVDD PWADMGKVRQ SITARIRKQL GLE 833
Length:833
Mass (Da):93,443
Last modified:September 5, 2012 - v1
Checksum:iED524CD54B29CA10
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003588 Genomic DNA. Translation: AFK72594.1.
RefSeqiWP_014756706.1. NC_017986.1.
YP_006389709.1. NC_017986.1.

Genome annotation databases

EnsemblBacteriaiAFK72594; AFK72594; YSA_10746.
GeneIDi12989883.
KEGGippi:YSA_10746.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003588 Genomic DNA. Translation: AFK72594.1 .
RefSeqi WP_014756706.1. NC_017986.1.
YP_006389709.1. NC_017986.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AFK72594 ; AFK72594 ; YSA_10746 .
GeneIDi 12989883.
KEGGi ppi:YSA_10746.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci PPUT231023:GLIT-5899-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete Genome Sequence of the Naphthalene-Degrading Pseudomonas putida Strain ND6."
    Li S., Zhao H., Li Y., Niu S., Cai B.
    J. Bacteriol. 194:5154-5155(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ND6Imported.

Entry informationi

Entry nameiI3V4C3_PSEPU
AccessioniPrimary (citable) accession number: I3V4C3
Entry historyi
Integrated into UniProtKB/TrEMBL: September 5, 2012
Last sequence update: September 5, 2012
Last modified: September 3, 2014
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

Similar proteinsi