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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

YSA_10746

Organism
Pseudomonas putida ND6
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPPUT231023:GLIT-5899-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
ORF Names:YSA_10746Imported
OrganismiPseudomonas putida ND6Imported
Taxonomic identifieri231023 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000005268: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I3V4C3-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAKPLQEYAR KRDFNATPEP SGERKRGKRA HALQFCIQKH DASHLHYDFR
60 70 80 90 100
LELDGTLKSW AIPKGPSLDP KVRRLAVHVE DHPLDYADFE GHIPEGHYGA
110 120 130 140 150
GDVIVWDRGI WEPEGDAHEA YVKGKLRFRL QGEKLAGVWN LFRTHLAGKK
160 170 180 190 200
EQWMLVKSHD AQARSETEYS IVEALPDSVL SERTLVPRKS AAKKATAPRS
210 220 230 240 250
SRKRADKVQA APLPAQLQPQ LATLVDSPPS GDWRYEVKFD GYRILARIEG
260 270 280 290 300
QDIRLFTRNG HDWSSKMPRQ VAALRALGID SAWLDGEMVV ADENGMADFQ
310 320 330 340 350
ALQNAFDTEH DERITYYLFD LPFLGGQDLR QLPLQHRRDT LRQLLEHNHS
360 370 380 390 400
DFIKYSADFD EPVESLLDSA CRLKLEGLIG KRADSVYSGR RSPDWIKLKC
410 420 430 440 450
KQRQEFVIVG YTDPKGSRSG FGALLLALHD NERGELRYAG KVGTGFNTTT
460 470 480 490 500
LASIHTRLKP LEIASPALPS PPAGAEARGV HWLRPQLLAE VAFAQMTRDG
510 520 530 540 550
IVRHSVFHGL RDDKAATAID LERAMPAKTV SNRNKQAKAS ENLGELRLTH
560 570 580 590 600
PDRVIDPTTG VTKREVAEYY AGISQWILPQ LKHRPVALVR APDGLGGELF
610 620 630 640 650
FQKNAGQLHI PNVLSYEKAE AGQAAMVINR PDTLLGAVQM NTLELHTWNA
660 670 680 690 700
TDKDFDKPDR FVLDLDPDPA LPWKAMVEAT QLALTLLDEL GLKVFLKTSG
710 720 730 740 750
GKGIHVVVPL TRRAGWDEVK DFSHAIVNYL AKLFPERLSA VSGPKNRVGR
760 770 780 790 800
IFIDYLRNGK GATTACAYSL RARDGLPVSV PIWREELAQI KAANQWNITN
810 820 830
LHERLAEVDD PWADMGKVRQ SITARIRKQL GLE
Length:833
Mass (Da):93,443
Last modified:September 5, 2012 - v1
Checksum:iED524CD54B29CA10
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003588 Genomic DNA. Translation: AFK72594.1.
RefSeqiWP_014756706.1. NC_017986.1.
YP_006389709.1. NC_017986.1.

Genome annotation databases

EnsemblBacteriaiAFK72594; AFK72594; YSA_10746.
GeneIDi12989883.
KEGGippi:YSA_10746.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003588 Genomic DNA. Translation: AFK72594.1.
RefSeqiWP_014756706.1. NC_017986.1.
YP_006389709.1. NC_017986.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAFK72594; AFK72594; YSA_10746.
GeneIDi12989883.
KEGGippi:YSA_10746.

Phylogenomic databases

KOiK01971.

Enzyme and pathway databases

BioCyciPPUT231023:GLIT-5899-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete Genome Sequence of the Naphthalene-Degrading Pseudomonas putida Strain ND6."
    Li S., Zhao H., Li Y., Niu S., Cai B.
    J. Bacteriol. 194:5154-5155(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ND6Imported.

Entry informationi

Entry nameiI3V4C3_PSEPU
AccessioniPrimary (citable) accession number: I3V4C3
Entry historyi
Integrated into UniProtKB/TrEMBL: September 5, 2012
Last sequence update: September 5, 2012
Last modified: January 7, 2015
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.