I3V4C3 (I3V4C3_PSEPU) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA ligase EMBL AFK72594.1

Gene names

ORF Names:

YSA_10746 EMBL AFK72594.1

Organism

Pseudomonas putida ND6 EMBL AFK72594.1

Taxonomic identifier

231023 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas › Pseudomonas putida group › Pseudomonas putida

Protein attributes

Sequence length	833 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL AFK72594.1
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	I3V4C3 [UniParc]. Last modified September 5, 2012. Version 1. Checksum: ED524CD54B29CA10	FASTA	833	93,443
	10 20 30 40 50 60 MAKPLQEYAR KRDFNATPEP SGERKRGKRA HALQFCIQKH DASHLHYDFR LELDGTLKSW 70 80 90 100 110 120 AIPKGPSLDP KVRRLAVHVE DHPLDYADFE GHIPEGHYGA GDVIVWDRGI WEPEGDAHEA 130 140 150 160 170 180 YVKGKLRFRL QGEKLAGVWN LFRTHLAGKK EQWMLVKSHD AQARSETEYS IVEALPDSVL 190 200 210 220 230 240 SERTLVPRKS AAKKATAPRS SRKRADKVQA APLPAQLQPQ LATLVDSPPS GDWRYEVKFD 250 260 270 280 290 300 GYRILARIEG QDIRLFTRNG HDWSSKMPRQ VAALRALGID SAWLDGEMVV ADENGMADFQ 310 320 330 340 350 360 ALQNAFDTEH DERITYYLFD LPFLGGQDLR QLPLQHRRDT LRQLLEHNHS DFIKYSADFD 370 380 390 400 410 420 EPVESLLDSA CRLKLEGLIG KRADSVYSGR RSPDWIKLKC KQRQEFVIVG YTDPKGSRSG 430 440 450 460 470 480 FGALLLALHD NERGELRYAG KVGTGFNTTT LASIHTRLKP LEIASPALPS PPAGAEARGV 490 500 510 520 530 540 HWLRPQLLAE VAFAQMTRDG IVRHSVFHGL RDDKAATAID LERAMPAKTV SNRNKQAKAS 550 560 570 580 590 600 ENLGELRLTH PDRVIDPTTG VTKREVAEYY AGISQWILPQ LKHRPVALVR APDGLGGELF 610 620 630 640 650 660 FQKNAGQLHI PNVLSYEKAE AGQAAMVINR PDTLLGAVQM NTLELHTWNA TDKDFDKPDR 670 680 690 700 710 720 FVLDLDPDPA LPWKAMVEAT QLALTLLDEL GLKVFLKTSG GKGIHVVVPL TRRAGWDEVK 730 740 750 760 770 780 DFSHAIVNYL AKLFPERLSA VSGPKNRVGR IFIDYLRNGK GATTACAYSL RARDGLPVSV 790 800 810 820 830 PIWREELAQI KAANQWNITN LHERLAEVDD PWADMGKVRQ SITARIRKQL GLE

References

[1]	"Complete Genome Sequence of the Naphthalene-Degrading Pseudomonas putida Strain ND6." Li S., Zhao H., Li Y., Niu S., Cai B. J. Bacteriol. 194:5154-5155(2012) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: ND6 EMBL AFK72594.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP003588 Genomic DNA. Translation: AFK72594.1.
RefSeq	YP_006389709.1. NC_017986.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AFK72594; AFK72594; YSA_10746.
GeneID	12989883.
KEGG	ppi:YSA_10746.
Phylogenomic databases
KO	K01971.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

I3V4C3_PSEPU

Accession

Primary (citable) accession number: I3V4C3

Entry history

Integrated into UniProtKB/TrEMBL:	September 5, 2012
Last sequence update:	September 5, 2012
Last modified:	April 3, 2013
This is version 8 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)