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I3UF79

- I3UF79_ADVKW

UniProt

I3UF79 - I3UF79_ADVKW

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Protein
Submitted name:

ATP-dependent DNA ligase

Gene
TKWG_19270
Organism
Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001) (Tetrathiobacter kashmirensis)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciAKAS1036672:GL7X-2969-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:TKWG_19270Imported
OrganismiAdvenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001) (Tetrathiobacter kashmirensis)Imported
Taxonomic identifieri1036672 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesAlcaligenaceae
ProteomesiUP000005267: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I3UF79-1 [UniParc]FASTAAdd to Basket

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MSLADYQRKR RFDRTPEPQE DAIGGGRPIF VVQLHHASHR HYDFRLQVAG    50
VLKSWAVPKG PSLDPSVKRL AVQVEDHPVS YARFEGDIPK GEYGGGHVRI 100
FDSGIWSTNE EVEAQLAKGH LKFELFGDIL QGGWHLIRSH RRSRQQQWLL 150
IKQDDAFAGD KEADDFVDES AALVTDGKGP AAKKASAGKK TAAQKRAKDR 200
AAKNITSKGT TSKAVADTKS QKNPATAAWR AQLDAFKGAK RQPLQHKPFA 250
PQLCLTADKA PVGDDWLHEV KWDGYRLLCT IVDGTPALWS RNGLDWTARL 300
PDVASDMASL GLQQAAFDGE LVVLEGVHSN FSALQATLSG EKQAPLSYLL 350
FDLIHLQGFD LCDVPLQERK ALLETVLQGA PSRLRYSSHL VGSGPQVFAR 400
VTAEKLEGII SKRVNASYHA GRSRSWQKIK MELSDEFAIA GFIEPKGSRM 450
GIGSLLLALP EGKSGWRLAG RVGTGMNDAM LRQLSTLLRP VAETDPTVTV 500
AGIDSDLRRA KWVKPRHVVE VFYRGHSSQG LLRHTAFKTL REDKSVADLR 550
GSQAKEEPMK KDTVQISSPD RLVYPEMQVS KQDVADYYER VMDWLLPGVA 600
GRPLSVLRCP DGTQKACFFQ KHHTAGMDVS TVSLQEEQGG RQDYLMVRDK 650
TDVMQLVQFN SLEFHPWGAL ADSPDDCDRL VFDLDPSEQV SWATVKKAAR 700
QVRDLLEQLQ LQSFVRTTGG KGLHVVAPLK PPVPWEDARQ FARAFAESLA 750
GAHPDTYIAT ASKKQRKGLI FVDYLRNGRG ATSVCSYSLR ARPGAAVATP 800
LRWEELGRVK SSDAFHIRNL PQRLARLASD PWEEMTAIRQ SLPDLPE 847
Length:847
Mass (Da):93,948
Last modified:September 5, 2012 - v1
Checksum:i05E95C6DDBE762B8
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003555 Genomic DNA. Translation: AFK63667.1.
RefSeqiYP_006380649.1. NC_017964.1.

Genome annotation databases

EnsemblBacteriaiAFK63667; AFK63667; TKWG_19270.
GeneIDi12996549.
KEGGiaka:TKWG_19270.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003555 Genomic DNA. Translation: AFK63667.1 .
RefSeqi YP_006380649.1. NC_017964.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AFK63667 ; AFK63667 ; TKWG_19270 .
GeneIDi 12996549.
KEGGi aka:TKWG_19270.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci AKAS1036672:GL7X-2969-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Whole-genome shotgun sequencing of the sulfur-oxidizing chemoautotroph Tetrathiobacter kashmirensis."
    Ghosh W., George A., Agarwal A., Raj P., Alam M., Pyne P., Das Gupta S.K.
    J. Bacteriol. 193:5553-5554(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 17095 / LMG 22695 / WT001.

Entry informationi

Entry nameiI3UF79_ADVKW
AccessioniPrimary (citable) accession number: I3UF79
Entry historyi
Integrated into UniProtKB/TrEMBL: September 5, 2012
Last sequence update: September 5, 2012
Last modified: April 16, 2014
This is version 11 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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