I3UF79 (I3UF79_9BURK) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA ligase EMBL AFK63667.1

Gene names

ORF Names:

TKWG_19270 EMBL AFK63667.1

Organism

Advenella kashmirensis WT001 EMBL AFK63667.1

Taxonomic identifier

1036672 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Alcaligenaceae › Advenella › Advenella kashmirensis

Protein attributes

Sequence length	847 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL AFK63667.1
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro DNA primase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	I3UF79 [UniParc]. Last modified September 5, 2012. Version 1. Checksum: 05E95C6DDBE762B8	FASTA	847	93,948
	10 20 30 40 50 60 MSLADYQRKR RFDRTPEPQE DAIGGGRPIF VVQLHHASHR HYDFRLQVAG VLKSWAVPKG 70 80 90 100 110 120 PSLDPSVKRL AVQVEDHPVS YARFEGDIPK GEYGGGHVRI FDSGIWSTNE EVEAQLAKGH 130 140 150 160 170 180 LKFELFGDIL QGGWHLIRSH RRSRQQQWLL IKQDDAFAGD KEADDFVDES AALVTDGKGP 190 200 210 220 230 240 AAKKASAGKK TAAQKRAKDR AAKNITSKGT TSKAVADTKS QKNPATAAWR AQLDAFKGAK 250 260 270 280 290 300 RQPLQHKPFA PQLCLTADKA PVGDDWLHEV KWDGYRLLCT IVDGTPALWS RNGLDWTARL 310 320 330 340 350 360 PDVASDMASL GLQQAAFDGE LVVLEGVHSN FSALQATLSG EKQAPLSYLL FDLIHLQGFD 370 380 390 400 410 420 LCDVPLQERK ALLETVLQGA PSRLRYSSHL VGSGPQVFAR VTAEKLEGII SKRVNASYHA 430 440 450 460 470 480 GRSRSWQKIK MELSDEFAIA GFIEPKGSRM GIGSLLLALP EGKSGWRLAG RVGTGMNDAM 490 500 510 520 530 540 LRQLSTLLRP VAETDPTVTV AGIDSDLRRA KWVKPRHVVE VFYRGHSSQG LLRHTAFKTL 550 560 570 580 590 600 REDKSVADLR GSQAKEEPMK KDTVQISSPD RLVYPEMQVS KQDVADYYER VMDWLLPGVA 610 620 630 640 650 660 GRPLSVLRCP DGTQKACFFQ KHHTAGMDVS TVSLQEEQGG RQDYLMVRDK TDVMQLVQFN 670 680 690 700 710 720 SLEFHPWGAL ADSPDDCDRL VFDLDPSEQV SWATVKKAAR QVRDLLEQLQ LQSFVRTTGG 730 740 750 760 770 780 KGLHVVAPLK PPVPWEDARQ FARAFAESLA GAHPDTYIAT ASKKQRKGLI FVDYLRNGRG 790 800 810 820 830 840 ATSVCSYSLR ARPGAAVATP LRWEELGRVK SSDAFHIRNL PQRLARLASD PWEEMTAIRQ SLPDLPE

References

[1]	"Whole-genome shotgun sequencing of the sulfur-oxidizing chemoautotroph Tetrathiobacter kashmirensis." Ghosh W., George A., Agarwal A., Raj P., Alam M., Pyne P., Das Gupta S.K. J. Bacteriol. 193:5553-5554(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: WT001 EMBL AFK63667.1.
[2]	"Whole genome sequence of Advenella kashmirensis and comparative genomics of non-pathogenic and pathogenic members of Alcaligenaceae." Alam M., Pyne P., Roy C., Ali A., Mandal A., Chakraborty S., Ghosh W. Submitted (MAY-2012) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: WT001 EMBL AFK63667.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP003555 Genomic DNA. Translation: AFK63667.1.
RefSeq	YP_006380649.1. NC_017964.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AFK63667; AFK63667; TKWG_19270.
GeneID	12996549.
KEGG	aka:TKWG_19270.
Phylogenomic databases
KO	K01971.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR002755. DNA_primase_S. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF01896. DNA_primase_S. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

I3UF79_9BURK

Accession

Primary (citable) accession number: I3UF79

Entry history

Integrated into UniProtKB/TrEMBL:	September 5, 2012
Last sequence update:	September 5, 2012
Last modified:	April 3, 2013
This is version 7 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)