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I3UF79

- I3UF79_ADVKW

UniProt

I3UF79 - I3UF79_ADVKW

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

TKWG_19270

Organism
Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001) (Tetrathiobacter kashmirensis)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 12 (01 Oct 2014)
      Sequence version 1 (05 Sep 2012)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciAKAS1036672:GL7X-2969-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:TKWG_19270Imported
    OrganismiAdvenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001) (Tetrathiobacter kashmirensis)Imported
    Taxonomic identifieri1036672 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesAlcaligenaceae
    ProteomesiUP000005267: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    I3UF79-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSLADYQRKR RFDRTPEPQE DAIGGGRPIF VVQLHHASHR HYDFRLQVAG    50
    VLKSWAVPKG PSLDPSVKRL AVQVEDHPVS YARFEGDIPK GEYGGGHVRI 100
    FDSGIWSTNE EVEAQLAKGH LKFELFGDIL QGGWHLIRSH RRSRQQQWLL 150
    IKQDDAFAGD KEADDFVDES AALVTDGKGP AAKKASAGKK TAAQKRAKDR 200
    AAKNITSKGT TSKAVADTKS QKNPATAAWR AQLDAFKGAK RQPLQHKPFA 250
    PQLCLTADKA PVGDDWLHEV KWDGYRLLCT IVDGTPALWS RNGLDWTARL 300
    PDVASDMASL GLQQAAFDGE LVVLEGVHSN FSALQATLSG EKQAPLSYLL 350
    FDLIHLQGFD LCDVPLQERK ALLETVLQGA PSRLRYSSHL VGSGPQVFAR 400
    VTAEKLEGII SKRVNASYHA GRSRSWQKIK MELSDEFAIA GFIEPKGSRM 450
    GIGSLLLALP EGKSGWRLAG RVGTGMNDAM LRQLSTLLRP VAETDPTVTV 500
    AGIDSDLRRA KWVKPRHVVE VFYRGHSSQG LLRHTAFKTL REDKSVADLR 550
    GSQAKEEPMK KDTVQISSPD RLVYPEMQVS KQDVADYYER VMDWLLPGVA 600
    GRPLSVLRCP DGTQKACFFQ KHHTAGMDVS TVSLQEEQGG RQDYLMVRDK 650
    TDVMQLVQFN SLEFHPWGAL ADSPDDCDRL VFDLDPSEQV SWATVKKAAR 700
    QVRDLLEQLQ LQSFVRTTGG KGLHVVAPLK PPVPWEDARQ FARAFAESLA 750
    GAHPDTYIAT ASKKQRKGLI FVDYLRNGRG ATSVCSYSLR ARPGAAVATP 800
    LRWEELGRVK SSDAFHIRNL PQRLARLASD PWEEMTAIRQ SLPDLPE 847
    Length:847
    Mass (Da):93,948
    Last modified:September 5, 2012 - v1
    Checksum:i05E95C6DDBE762B8
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003555 Genomic DNA. Translation: AFK63667.1.
    RefSeqiYP_006380649.1. NC_017964.1.

    Genome annotation databases

    EnsemblBacteriaiAFK63667; AFK63667; TKWG_19270.
    GeneIDi12996549.
    KEGGiaka:TKWG_19270.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003555 Genomic DNA. Translation: AFK63667.1 .
    RefSeqi YP_006380649.1. NC_017964.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AFK63667 ; AFK63667 ; TKWG_19270 .
    GeneIDi 12996549.
    KEGGi aka:TKWG_19270.

    Phylogenomic databases

    KOi K01971.

    Enzyme and pathway databases

    BioCyci AKAS1036672:GL7X-2969-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Whole-genome shotgun sequencing of the sulfur-oxidizing chemoautotroph Tetrathiobacter kashmirensis."
      Ghosh W., George A., Agarwal A., Raj P., Alam M., Pyne P., Das Gupta S.K.
      J. Bacteriol. 193:5553-5554(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 17095 / LMG 22695 / WT001Imported.

    Entry informationi

    Entry nameiI3UF79_ADVKW
    AccessioniPrimary (citable) accession number: I3UF79
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 5, 2012
    Last sequence update: September 5, 2012
    Last modified: October 1, 2014
    This is version 12 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3