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I3UF79

- I3UF79_ADVKW

UniProt

I3UF79 - I3UF79_ADVKW

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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

TKWG_19270

Organism
Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001) (Tetrathiobacter kashmirensis)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciAKAS1036672:GL7X-2969-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:TKWG_19270Imported
OrganismiAdvenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001) (Tetrathiobacter kashmirensis)Imported
Taxonomic identifieri1036672 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesAlcaligenaceae
ProteomesiUP000005267: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I3UF79-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSLADYQRKR RFDRTPEPQE DAIGGGRPIF VVQLHHASHR HYDFRLQVAG
60 70 80 90 100
VLKSWAVPKG PSLDPSVKRL AVQVEDHPVS YARFEGDIPK GEYGGGHVRI
110 120 130 140 150
FDSGIWSTNE EVEAQLAKGH LKFELFGDIL QGGWHLIRSH RRSRQQQWLL
160 170 180 190 200
IKQDDAFAGD KEADDFVDES AALVTDGKGP AAKKASAGKK TAAQKRAKDR
210 220 230 240 250
AAKNITSKGT TSKAVADTKS QKNPATAAWR AQLDAFKGAK RQPLQHKPFA
260 270 280 290 300
PQLCLTADKA PVGDDWLHEV KWDGYRLLCT IVDGTPALWS RNGLDWTARL
310 320 330 340 350
PDVASDMASL GLQQAAFDGE LVVLEGVHSN FSALQATLSG EKQAPLSYLL
360 370 380 390 400
FDLIHLQGFD LCDVPLQERK ALLETVLQGA PSRLRYSSHL VGSGPQVFAR
410 420 430 440 450
VTAEKLEGII SKRVNASYHA GRSRSWQKIK MELSDEFAIA GFIEPKGSRM
460 470 480 490 500
GIGSLLLALP EGKSGWRLAG RVGTGMNDAM LRQLSTLLRP VAETDPTVTV
510 520 530 540 550
AGIDSDLRRA KWVKPRHVVE VFYRGHSSQG LLRHTAFKTL REDKSVADLR
560 570 580 590 600
GSQAKEEPMK KDTVQISSPD RLVYPEMQVS KQDVADYYER VMDWLLPGVA
610 620 630 640 650
GRPLSVLRCP DGTQKACFFQ KHHTAGMDVS TVSLQEEQGG RQDYLMVRDK
660 670 680 690 700
TDVMQLVQFN SLEFHPWGAL ADSPDDCDRL VFDLDPSEQV SWATVKKAAR
710 720 730 740 750
QVRDLLEQLQ LQSFVRTTGG KGLHVVAPLK PPVPWEDARQ FARAFAESLA
760 770 780 790 800
GAHPDTYIAT ASKKQRKGLI FVDYLRNGRG ATSVCSYSLR ARPGAAVATP
810 820 830 840
LRWEELGRVK SSDAFHIRNL PQRLARLASD PWEEMTAIRQ SLPDLPE
Length:847
Mass (Da):93,948
Last modified:September 5, 2012 - v1
Checksum:i05E95C6DDBE762B8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003555 Genomic DNA. Translation: AFK63667.1.
RefSeqiWP_014751758.1. NC_017964.1.
YP_006380649.1. NC_017964.1.

Genome annotation databases

EnsemblBacteriaiAFK63667; AFK63667; TKWG_19270.
GeneIDi12996549.
KEGGiaka:TKWG_19270.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003555 Genomic DNA. Translation: AFK63667.1 .
RefSeqi WP_014751758.1. NC_017964.1.
YP_006380649.1. NC_017964.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AFK63667 ; AFK63667 ; TKWG_19270 .
GeneIDi 12996549.
KEGGi aka:TKWG_19270.

Phylogenomic databases

KOi K01971.

Enzyme and pathway databases

BioCyci AKAS1036672:GL7X-2969-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Whole-genome shotgun sequencing of the sulfur-oxidizing chemoautotroph Tetrathiobacter kashmirensis."
    Ghosh W., George A., Agarwal A., Raj P., Alam M., Pyne P., Das Gupta S.K.
    J. Bacteriol. 193:5553-5554(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 17095 / LMG 22695 / WT001Imported.

Entry informationi

Entry nameiI3UF79_ADVKW
AccessioniPrimary (citable) accession number: I3UF79
Entry historyi
Integrated into UniProtKB/TrEMBL: September 5, 2012
Last sequence update: September 5, 2012
Last modified: October 29, 2014
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3