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I3TSH6 (I3TSH6_TISMK) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 13. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:TMO_a0311 EMBL AFK55714.1
Encoded onPlasmid pTM1 Ref.1 EMBL AFK55714.1
OrganismTistrella mobilis (strain KA081020-065) [Complete proteome] [HAMAP] EMBL AFK55714.1
Taxonomic identifier1110502 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhodospirillalesRhodospirillaceaeTistrella

Protein attributes

Sequence length812 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AFK55714.1
   Technical termComplete proteome
Plasmid EMBL AFK55714.1
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
I3TSH6 [UniParc].

Last modified September 5, 2012. Version 1.
Checksum: 1582A63D2C9D89EF

FASTA81288,382
        10         20         30         40         50         60 
MAADPLDSYR RKRRFDRTPE PEARSGRTPE GGRLTYAIQK HDARRLHYDL RLEWAGVLKS 

        70         80         90        100        110        120 
WAITRGPSLD PRQKRLAVRT EDHPLAYAGF EGQIPAGQYG AGEVVLWDRG HWEPVGDAED 

       130        140        150        160        170        180 
GLAAGRLDFI LHGERLRGRF VLVRMKPAAK AGRAPEKAEN WLLIKRDDAD ADPTGEVTRR 

       190        200        210        220        230        240 
HPGSVAVQPK REAAPLPGFV APMLATLTDR PPRGPGWVFE IKLDGYRALA AVSGGRAVIR 

       250        260        270        280        290        300 
TRSGLDWTDR FPGIARALAA RPGLDGVLLD GEMTAMTADG RTDFSALQAA LSAGGEGLHY 

       310        320        330        340        350        360 
GVFDLLAAGG ESLRHLPWTT RRARLRALLG APAGDGIHLV DHSPGPAGDL LDQVCAAGHE 

       370        380        390        400        410        420 
GLIAKRTDAP YRPGRGHAWL KVKCSQAGEY VVVGTSPSEA GRPFASLLLA VQDRGTCRYA 

       430        440        450        460        470        480 
GRVGAGFSDR DFAWLAPRLT ALARRTPPVD RDSLPPAVAR AARWVEPRIV VQIAHGGLTG 

       490        500        510        520        530        540 
EGLIRQGRYL GPREDKPAAE VEADRVMAVE EAEAMDETGD SLRGVRLTHP DRVLFPEQGI 

       550        560        570        580        590        600 
TKRDLARWFD AVAGLMMPHL ENRLVSLVRC PEGRRKACFF QRHAGRGLPR GFASRKLTDS 

       610        620        630        640        650        660 
LGSTEEYVLV RDPEGLVGAA QIGVLELHLW GSRIDRPQRP DRLVFDLDPD PAVGFEAVRQ 

       670        680        690        700        710        720 
AAFDMRDALA ALDLASVPLL TGGKGVHVVV PITRRHDWPV VKAAAKALAQ RFADHDPGRF 

       730        740        750        760        770        780 
VATMSKAKRR GRIFIDHFRN DRTATAICPW SPRARAGAPV ARPVDWQMLA GIDRADAFRL 

       790        800        810 
GDPLPATDPW AGLVPPRQGL TAAALRALGV AE 

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References

[1]"Bacterial biosynthesis and maturation of the didemnin anti-cancer agents."
Xu Y., Kersten R.D., Nam S.J., Lu L., Al-Suwailem A.M., Zheng H., Fenical W., Dorrestein P.C., Moore B.S., Qian P.Y.
J. Am. Chem. Soc. 134:8625-8632(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: KA081020-065 EMBL AFK55714.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP003237 Genomic DNA. Translation: AFK55714.1.
RefSeqYP_006373298.1. NC_017957.2.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFK55714; AFK55714; TMO_a0311.
GeneID13002798.
KEGGtmo:TMO_a0311.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.
OMADISNESM.

Enzyme and pathway databases

BioCycTMOB1110502:GLMJ-4876-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameI3TSH6_TISMK
AccessionPrimary (citable) accession number: I3TSH6
Entry history
Integrated into UniProtKB/TrEMBL: September 5, 2012
Last sequence update: September 5, 2012
Last modified: May 14, 2014
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)