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I3TSH6

- I3TSH6_TISMK

UniProt

I3TSH6 - I3TSH6_TISMK

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Protein
Submitted name:

DNA ligase D

Gene

TMO_a0311

Organism
Tistrella mobilis (strain KA081020-065)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciTMOB1110502:GLMJ-4876-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:TMO_a0311Imported
Encoded oniPlasmid pTM1Imported
OrganismiTistrella mobilis (strain KA081020-065)Imported
Taxonomic identifieri1110502 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodospirillalesRhodospirillaceaeTistrella
ProteomesiUP000005258: Plasmid pTM1

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiDISNESM.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I3TSH6-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAADPLDSYR RKRRFDRTPE PEARSGRTPE GGRLTYAIQK HDARRLHYDL
60 70 80 90 100
RLEWAGVLKS WAITRGPSLD PRQKRLAVRT EDHPLAYAGF EGQIPAGQYG
110 120 130 140 150
AGEVVLWDRG HWEPVGDAED GLAAGRLDFI LHGERLRGRF VLVRMKPAAK
160 170 180 190 200
AGRAPEKAEN WLLIKRDDAD ADPTGEVTRR HPGSVAVQPK REAAPLPGFV
210 220 230 240 250
APMLATLTDR PPRGPGWVFE IKLDGYRALA AVSGGRAVIR TRSGLDWTDR
260 270 280 290 300
FPGIARALAA RPGLDGVLLD GEMTAMTADG RTDFSALQAA LSAGGEGLHY
310 320 330 340 350
GVFDLLAAGG ESLRHLPWTT RRARLRALLG APAGDGIHLV DHSPGPAGDL
360 370 380 390 400
LDQVCAAGHE GLIAKRTDAP YRPGRGHAWL KVKCSQAGEY VVVGTSPSEA
410 420 430 440 450
GRPFASLLLA VQDRGTCRYA GRVGAGFSDR DFAWLAPRLT ALARRTPPVD
460 470 480 490 500
RDSLPPAVAR AARWVEPRIV VQIAHGGLTG EGLIRQGRYL GPREDKPAAE
510 520 530 540 550
VEADRVMAVE EAEAMDETGD SLRGVRLTHP DRVLFPEQGI TKRDLARWFD
560 570 580 590 600
AVAGLMMPHL ENRLVSLVRC PEGRRKACFF QRHAGRGLPR GFASRKLTDS
610 620 630 640 650
LGSTEEYVLV RDPEGLVGAA QIGVLELHLW GSRIDRPQRP DRLVFDLDPD
660 670 680 690 700
PAVGFEAVRQ AAFDMRDALA ALDLASVPLL TGGKGVHVVV PITRRHDWPV
710 720 730 740 750
VKAAAKALAQ RFADHDPGRF VATMSKAKRR GRIFIDHFRN DRTATAICPW
760 770 780 790 800
SPRARAGAPV ARPVDWQMLA GIDRADAFRL GDPLPATDPW AGLVPPRQGL
810
TAAALRALGV AE
Length:812
Mass (Da):88,382
Last modified:September 5, 2012 - v1
Checksum:i1582A63D2C9D89EF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003237 Genomic DNA. Translation: AFK55714.1.
RefSeqiYP_006373298.1. NC_017957.2.

Genome annotation databases

EnsemblBacteriaiAFK55714; AFK55714; TMO_a0311.
GeneIDi13002798.
KEGGitmo:TMO_a0311.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003237 Genomic DNA. Translation: AFK55714.1 .
RefSeqi YP_006373298.1. NC_017957.2.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AFK55714 ; AFK55714 ; TMO_a0311 .
GeneIDi 13002798.
KEGGi tmo:TMO_a0311.

Phylogenomic databases

KOi K01971.
OMAi DISNESM.

Enzyme and pathway databases

BioCyci TMOB1110502:GLMJ-4876-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiI3TSH6_TISMK
AccessioniPrimary (citable) accession number: I3TSH6
Entry historyi
Integrated into UniProtKB/TrEMBL: September 5, 2012
Last sequence update: September 5, 2012
Last modified: October 1, 2014
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, PlasmidImported, Reference proteomeImported

External Data

Dasty 3