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I3TSH6

- I3TSH6_TISMK

UniProt

I3TSH6 - I3TSH6_TISMK

Protein
Submitted name:

DNA ligase D

Gene

TMO_a0311

Organism
Tistrella mobilis (strain KA081020-065)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 14 (01 Oct 2014)
      Sequence version 1 (05 Sep 2012)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciTMOB1110502:GLMJ-4876-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Ordered Locus Names:TMO_a0311Imported
    Encoded oniPlasmid pTM1Imported
    OrganismiTistrella mobilis (strain KA081020-065)Imported
    Taxonomic identifieri1110502 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodospirillalesRhodospirillaceaeTistrella
    ProteomesiUP000005258: Plasmid pTM1

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.
    OMAiDISNESM.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    I3TSH6-1 [UniParc]FASTAAdd to Basket

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    MAADPLDSYR RKRRFDRTPE PEARSGRTPE GGRLTYAIQK HDARRLHYDL    50
    RLEWAGVLKS WAITRGPSLD PRQKRLAVRT EDHPLAYAGF EGQIPAGQYG 100
    AGEVVLWDRG HWEPVGDAED GLAAGRLDFI LHGERLRGRF VLVRMKPAAK 150
    AGRAPEKAEN WLLIKRDDAD ADPTGEVTRR HPGSVAVQPK REAAPLPGFV 200
    APMLATLTDR PPRGPGWVFE IKLDGYRALA AVSGGRAVIR TRSGLDWTDR 250
    FPGIARALAA RPGLDGVLLD GEMTAMTADG RTDFSALQAA LSAGGEGLHY 300
    GVFDLLAAGG ESLRHLPWTT RRARLRALLG APAGDGIHLV DHSPGPAGDL 350
    LDQVCAAGHE GLIAKRTDAP YRPGRGHAWL KVKCSQAGEY VVVGTSPSEA 400
    GRPFASLLLA VQDRGTCRYA GRVGAGFSDR DFAWLAPRLT ALARRTPPVD 450
    RDSLPPAVAR AARWVEPRIV VQIAHGGLTG EGLIRQGRYL GPREDKPAAE 500
    VEADRVMAVE EAEAMDETGD SLRGVRLTHP DRVLFPEQGI TKRDLARWFD 550
    AVAGLMMPHL ENRLVSLVRC PEGRRKACFF QRHAGRGLPR GFASRKLTDS 600
    LGSTEEYVLV RDPEGLVGAA QIGVLELHLW GSRIDRPQRP DRLVFDLDPD 650
    PAVGFEAVRQ AAFDMRDALA ALDLASVPLL TGGKGVHVVV PITRRHDWPV 700
    VKAAAKALAQ RFADHDPGRF VATMSKAKRR GRIFIDHFRN DRTATAICPW 750
    SPRARAGAPV ARPVDWQMLA GIDRADAFRL GDPLPATDPW AGLVPPRQGL 800
    TAAALRALGV AE 812
    Length:812
    Mass (Da):88,382
    Last modified:September 5, 2012 - v1
    Checksum:i1582A63D2C9D89EF
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003237 Genomic DNA. Translation: AFK55714.1.
    RefSeqiYP_006373298.1. NC_017957.2.

    Genome annotation databases

    EnsemblBacteriaiAFK55714; AFK55714; TMO_a0311.
    GeneIDi13002798.
    KEGGitmo:TMO_a0311.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003237 Genomic DNA. Translation: AFK55714.1 .
    RefSeqi YP_006373298.1. NC_017957.2.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AFK55714 ; AFK55714 ; TMO_a0311 .
    GeneIDi 13002798.
    KEGGi tmo:TMO_a0311.

    Phylogenomic databases

    KOi K01971.
    OMAi DISNESM.

    Enzyme and pathway databases

    BioCyci TMOB1110502:GLMJ-4876-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

    Entry informationi

    Entry nameiI3TSH6_TISMK
    AccessioniPrimary (citable) accession number: I3TSH6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 5, 2012
    Last sequence update: September 5, 2012
    Last modified: October 1, 2014
    This is version 14 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, PlasmidImported, Reference proteomeImported

    External Data

    Dasty 3