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I3TMB5

- I3TMB5_TISMK

UniProt

I3TMB5 - I3TMB5_TISMK

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

TMO_2065

Organism
Tistrella mobilis (strain KA081020-065)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 12 (01 Oct 2014)
      Sequence version 1 (05 Sep 2012)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciTMOB1110502:GLMJ-2090-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:TMO_2065Imported
    OrganismiTistrella mobilis (strain KA081020-065)Imported
    Taxonomic identifieri1110502 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodospirillalesRhodospirillaceaeTistrella
    ProteomesiUP000005258: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.
    OMAiKSASTHN.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    I3TMB5-1 [UniParc]FASTAAdd to Basket

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    MRRFADLLDR LILTPSRTTK LRLIGDYFAH TPDPDRGWAL AALAGTLDLR    50
    AARPSAIREL IGSRTDPVLF ALSYDYVGDL AETAALMWPE PAATGAGRND 100
    PGVRLSEVAE TLAAAPSAAA AMRSLAGWLD GLDTTGRWAL LKLATGGLRV 150
    GVSAGLAKAA FAAWAKLAPE AVEEVWHGLE PPYEALFAWA TGTGPRPDPR 200
    GLPHFRSFML ATPAELADLA PLDPSDFRAE WKWDGIRAQM VAAGGEIRLY 250
    ARSGDEIGRG FPDLLDAWPF GEAAVDGELV VMGPNDQPAP FAELQKRINR 300
    RTVGAGLLKS LPAHLRLYDL LAKGGVDLRP RPFTERRAAL EALVAAHPSP 350
    RFDLSPLVAF SSWAELDRLR ADPPAATIEG VMLKRRDTPY LAGRPKGPWF 400
    KWKRAPLTLD VVLMYAQRGH GRRSSYFSDY TFGVWRDDDT LVPVGKAYSG 450
    FTDQELVELD RWIRRNTTER FGPVRAVAPG LVLEVAFDSV QPSPRHKSGL 500
    ALRFPRIARI RWDKPAAEAD RLETAAGLVA GSPAASVT 538
    Length:538
    Mass (Da):58,625
    Last modified:September 5, 2012 - v1
    Checksum:iD50C446AF476BDF8
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003236 Genomic DNA. Translation: AFK53903.1.
    RefSeqiWP_014745581.1. NC_017956.1.
    YP_006371487.1. NC_017956.1.

    Genome annotation databases

    EnsemblBacteriaiAFK53903; AFK53903; TMO_2065.
    GeneIDi13005185.
    KEGGitmo:TMO_2065.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003236 Genomic DNA. Translation: AFK53903.1 .
    RefSeqi WP_014745581.1. NC_017956.1.
    YP_006371487.1. NC_017956.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AFK53903 ; AFK53903 ; TMO_2065 .
    GeneIDi 13005185.
    KEGGi tmo:TMO_2065.

    Phylogenomic databases

    KOi K01971.
    OMAi KSASTHN.

    Enzyme and pathway databases

    BioCyci TMOB1110502:GLMJ-2090-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: KA081020-065Imported.

    Entry informationi

    Entry nameiI3TMB5_TISMK
    AccessioniPrimary (citable) accession number: I3TMB5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 5, 2012
    Last sequence update: September 5, 2012
    Last modified: October 1, 2014
    This is version 12 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3