I3TMB5 (I3TMB5_TISMK) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA ligase EMBL AFK53903.1

Gene names

Ordered Locus Names:

TMO_2065 EMBL AFK53903.1

Organism

Tistrella mobilis (strain KA081020-065) [Complete proteome] [HAMAP] EMBL AFK53903.1

Taxonomic identifier

1110502 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhodospirillales › Rhodospirillaceae › Tistrella › Tistrella mobilis

Protein attributes

Sequence length	538 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL AFK53903.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	I3TMB5 [UniParc]. Last modified September 5, 2012. Version 1. Checksum: D50C446AF476BDF8	FASTA	538	58,625
	10 20 30 40 50 60 MRRFADLLDR LILTPSRTTK LRLIGDYFAH TPDPDRGWAL AALAGTLDLR AARPSAIREL 70 80 90 100 110 120 IGSRTDPVLF ALSYDYVGDL AETAALMWPE PAATGAGRND PGVRLSEVAE TLAAAPSAAA 130 140 150 160 170 180 AMRSLAGWLD GLDTTGRWAL LKLATGGLRV GVSAGLAKAA FAAWAKLAPE AVEEVWHGLE 190 200 210 220 230 240 PPYEALFAWA TGTGPRPDPR GLPHFRSFML ATPAELADLA PLDPSDFRAE WKWDGIRAQM 250 260 270 280 290 300 VAAGGEIRLY ARSGDEIGRG FPDLLDAWPF GEAAVDGELV VMGPNDQPAP FAELQKRINR 310 320 330 340 350 360 RTVGAGLLKS LPAHLRLYDL LAKGGVDLRP RPFTERRAAL EALVAAHPSP RFDLSPLVAF 370 380 390 400 410 420 SSWAELDRLR ADPPAATIEG VMLKRRDTPY LAGRPKGPWF KWKRAPLTLD VVLMYAQRGH 430 440 450 460 470 480 GRRSSYFSDY TFGVWRDDDT LVPVGKAYSG FTDQELVELD RWIRRNTTER FGPVRAVAPG 490 500 510 520 530 LVLEVAFDSV QPSPRHKSGL ALRFPRIARI RWDKPAAEAD RLETAAGLVA GSPAASVT

References

[1]

"Bacterial biosynthesis and maturation of the didemnin anti-cancer agents." Xu Y., Kersten R.D., Nam S.J., Lu L., Al-Suwailem A.M., Zheng H., Fenical W., Dorrestein P.C., Moore B.S., Qian P.Y. J. Am. Chem. Soc. 134:8625-8632(2012) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: KA081020-065 EMBL AFK53903.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP003236 Genomic DNA. Translation: AFK53903.1.
RefSeq	YP_006371487.1. NC_017956.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AFK53903; AFK53903; TMO_2065.
GeneID	13005185.
KEGG	tmo:TMO_2065.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01971.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

I3TMB5_TISMK

Accession

Primary (citable) accession number: I3TMB5

Entry history

Integrated into UniProtKB/TrEMBL:	September 5, 2012
Last sequence update:	September 5, 2012
Last modified:	April 3, 2013
This is version 7 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)