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I3RD38 (I3RD38_9EURY) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 10. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
ORF Names:Py04_0546 EMBL AFK22148.1
OrganismPyrococcus sp. ST04 [Complete proteome] EMBL AFK22148.1
Taxonomic identifier1183377 [NCBI]
Taxonomic lineageArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaePyrococcus

Protein attributes

Sequence length379 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AFK22148.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
I3RD38 [UniParc].

Last modified September 5, 2012. Version 1.
Checksum: DECA9C592BA15526

FASTA37943,629
        10         20         30         40         50         60 
MVSSRFKDIL TSLGISEERI EILEAKGGIV EDEYEGLRYL RFKDSAGKLR RGTVVFDFDK 

        70         80         90        100        110        120 
IILGFPHIKR VVNLEKGIRR IFKRGEFYVE EKVDGYNVRV TKVGERILAI TRGGFICPFT 

       130        140        150        160        170        180 
TERITDFVPE EFFKDNPNLV LVGEMAGPES PYLVEGPPYV KEDIKFFLFD VQEINTGKSL 

       190        200        210        220        230        240 
PVEERLKLAE EYGIPHVEVF GKYTRDDIGE LYALIEKLSE EGREGIVMKS PDMKKIVKYV 

       250        260        270        280        290        300 
TPYANINDIK IGARVFYELP PGYFTSRISR LAFYIAERKI RDEELRKLAE DLGKALLQPF 

       310        320        330        340        350        360 
VEGILDVEQG EEIAETFKIR VKKIETAYKM VTHFEKLGLN IEIVDIEEMD GLWRITFKRV 

       370 
YSDATEKIKE LVGGKAFVD 

« Hide

References

[1]"Complete Genome Sequence of the Hyperthermophilic Archaeon Pyrococcus sp. Strain ST04, Isolated from a Deep-Sea Hydrothermal Sulfide Chimney on the Juan de Fuca Ridge."
Jung J.H., Lee J.H., Holden J.F., Seo D.H., Shin H., Kim H.Y., Kim W., Ryu S., Park C.S.
J. Bacteriol. 194:4434-4435(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: ST04 EMBL AFK22148.1.
[2]Jung J.-H., Lee J.-H., Holden J.F., Seo D.-H., Shin H., Kim W., Ryu S., Park C.-S.
Submitted (MAY-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: ST04 EMBL AFK22148.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP003534 Genomic DNA. Translation: AFK22148.1.
RefSeqYP_006354223.1. NC_017946.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFK22148; AFK22148; Py04_0546.
GeneID13021777.
KEGGpys:Py04_0546.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK07468.

Enzyme and pathway databases

BioCycPSP1183377:GLJ2-557-MONOMER.

Family and domain databases

InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR001072. Uncharacterised_MJ0414.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
PRINTSPR01048. Y414FAMILY.
TIGRFAMsTIGR01209. TIGR01209. 1 hit.
ProtoNetSearch...

Entry information

Entry nameI3RD38_9EURY
AccessionPrimary (citable) accession number: I3RD38
Entry history
Integrated into UniProtKB/TrEMBL: September 5, 2012
Last sequence update: September 5, 2012
Last modified: April 16, 2014
This is version 10 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)