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Protein

Superoxide dismutase

Gene

sodA

Organism
Haloferax mediterranei (strain ATCC 33500 / DSM 1411 / JCM 8866 / NBRC 14739 / NCIMB 2177 / R-4) (Halobacterium mediterranei)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotationImported

Keywords - Ligandi

Metal-bindingUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutaseUniRule annotation (EC:1.15.1.1UniRule annotation)
Gene namesi
Name:sodAImported
Ordered Locus Names:HFX_6409Imported
ORF Names:C439_17593Imported
Encoded oniPlasmid pHM500Imported
OrganismiHaloferax mediterranei (strain ATCC 33500 / DSM 1411 / JCM 8866 / NBRC 14739 / NCIMB 2177 / R-4) (Halobacterium mediterranei)Imported
Taxonomic identifieri523841 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaHalobacteriaHaloferacalesHaloferacaceaeHaloferax
Proteomesi
  • UP000011603 Componenti: Unassembled WGS sequence
  • UP000006469 Componenti: Plasmid pHM500

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini4 – 84Sod_Fe_NInterPro annotationAdd BLAST81
Domaini91 – 187Sod_Fe_CInterPro annotationAdd BLAST97

Sequence similaritiesi

Belongs to the iron/manganese superoxide dismutase family.UniRule annotation

Phylogenomic databases

KOiK04564.
OMAiWDSIGQK.

Family and domain databases

InterProiIPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view]
PANTHERiPTHR11404. PTHR11404. 1 hit.
PfamiPF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiPS00088. SOD_MN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

I3RBB8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSDYELDPLP YEYDALEPHI SEQVLTWHHD THHQGYVNGW NAAEETLEAN
60 70 80 90 100
REAGEFDSSA GAIRNVTHNG CGHILHDLFW QNMSPEGGDE PTGALADRIA
110 120 130 140 150
EDFGSYEAWK GEFEAAAGAA GGWALLVYDS FSNQLRNVVV DKHDQGALWG
160 170 180 190 200
SHPILALDVW EHSYYHDYGP ARGDFISAFF EVVDWDVPAA RYEQALERFE
Length:200
Mass (Da):22,485
Last modified:September 5, 2012 - v1
Checksum:i44DF49E9F814A0CE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001871 Genomic DNA. Translation: AFK21528.1.
AOLO01000015 Genomic DNA. Translation: ELZ97159.1.
RefSeqiWP_004060713.1. NZ_AOLO01000015.1.

Genome annotation databases

EnsemblBacteriaiAFK21528; AFK21528; HFX_6409.
ELZ97159; ELZ97159; C439_17593.
GeneIDi13025654.
KEGGihme:HFX_6409.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001871 Genomic DNA. Translation: AFK21528.1.
AOLO01000015 Genomic DNA. Translation: ELZ97159.1.
RefSeqiWP_004060713.1. NZ_AOLO01000015.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAFK21528; AFK21528; HFX_6409.
ELZ97159; ELZ97159; C439_17593.
GeneIDi13025654.
KEGGihme:HFX_6409.

Phylogenomic databases

KOiK04564.
OMAiWDSIGQK.

Family and domain databases

InterProiIPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view]
PANTHERiPTHR11404. PTHR11404. 1 hit.
PfamiPF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiPS00088. SOD_MN. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiI3RBB8_HALMT
AccessioniPrimary (citable) accession number: I3RBB8
Entry historyi
Integrated into UniProtKB/TrEMBL: September 5, 2012
Last sequence update: September 5, 2012
Last modified: November 2, 2016
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported, PlasmidImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.