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I3RBB8

- I3RBB8_HALMT

UniProt

I3RBB8 - I3RBB8_HALMT

Protein

Superoxide dismutase

Gene

sodA

Organism
Haloferax mediterranei (strain ATCC 33500 / DSM 1411 / JCM 8866 / NBRC 14739 / NCIMB 2177 / R-4) (Halobacterium mediterranei)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 15 (01 Oct 2014)
      Sequence version 1 (05 Sep 2012)
      Previous versions | rss
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    Functioni

    Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

    Catalytic activityi

    2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

    GO - Molecular functioni

    1. metal ion binding Source: InterPro
    2. superoxide dismutase activity Source: UniProtKB-EC

    Keywords - Molecular functioni

    OxidoreductaseUniRule annotationImported

    Enzyme and pathway databases

    BioCyciHMED523841:GLDU-3415-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Superoxide dismutaseUniRule annotation (EC:1.15.1.1UniRule annotation)
    Gene namesi
    Name:sodAImported
    Ordered Locus Names:HFX_6409Imported
    ORF Names:C439_17593Imported
    Encoded oniPlasmid pHM500Imported
    OrganismiHaloferax mediterranei (strain ATCC 33500 / DSM 1411 / JCM 8866 / NBRC 14739 / NCIMB 2177 / R-4) (Halobacterium mediterranei)Imported
    Taxonomic identifieri523841 [NCBI]
    Taxonomic lineageiArchaeaEuryarchaeotaHalobacteriaHalobacterialesHalobacteriaceaeHaloferax
    ProteomesiUP000006469: Plasmid pHM500

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the iron/manganese superoxide dismutase family.UniRule annotation

    Phylogenomic databases

    KOiK04564.
    OMAiRAYVPIG.

    Family and domain databases

    InterProiIPR001189. Mn/Fe_SOD.
    IPR019833. Mn/Fe_SOD_BS.
    IPR019832. Mn/Fe_SOD_C.
    IPR019831. Mn/Fe_SOD_N.
    [Graphical view]
    PANTHERiPTHR11404. PTHR11404. 1 hit.
    PfamiPF02777. Sod_Fe_C. 1 hit.
    PF00081. Sod_Fe_N. 1 hit.
    [Graphical view]
    PIRSFiPIRSF000349. SODismutase. 1 hit.
    PRINTSiPR01703. MNSODISMTASE.
    SUPFAMiSSF46609. SSF46609. 1 hit.
    SSF54719. SSF54719. 1 hit.
    PROSITEiPS00088. SOD_MN. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    I3RBB8-1 [UniParc]FASTAAdd to Basket

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    MSDYELDPLP YEYDALEPHI SEQVLTWHHD THHQGYVNGW NAAEETLEAN    50
    REAGEFDSSA GAIRNVTHNG CGHILHDLFW QNMSPEGGDE PTGALADRIA 100
    EDFGSYEAWK GEFEAAAGAA GGWALLVYDS FSNQLRNVVV DKHDQGALWG 150
    SHPILALDVW EHSYYHDYGP ARGDFISAFF EVVDWDVPAA RYEQALERFE 200
    Length:200
    Mass (Da):22,485
    Last modified:September 5, 2012 - v1
    Checksum:i44DF49E9F814A0CE
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001871 Genomic DNA. Translation: AFK21528.1.
    AOLO01000015 Genomic DNA. Translation: ELZ97159.1.
    RefSeqiYP_006351515.1. NC_017944.1.

    Genome annotation databases

    EnsemblBacteriaiAFK21528; AFK21528; HFX_6409.
    ELZ97159; ELZ97159; C439_17593.
    GeneIDi13025654.
    KEGGihme:HFX_6409.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001871 Genomic DNA. Translation: AFK21528.1 .
    AOLO01000015 Genomic DNA. Translation: ELZ97159.1 .
    RefSeqi YP_006351515.1. NC_017944.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AFK21528 ; AFK21528 ; HFX_6409 .
    ELZ97159 ; ELZ97159 ; C439_17593 .
    GeneIDi 13025654.
    KEGGi hme:HFX_6409.

    Phylogenomic databases

    KOi K04564.
    OMAi RAYVPIG.

    Enzyme and pathway databases

    BioCyci HMED523841:GLDU-3415-MONOMER.

    Family and domain databases

    InterProi IPR001189. Mn/Fe_SOD.
    IPR019833. Mn/Fe_SOD_BS.
    IPR019832. Mn/Fe_SOD_C.
    IPR019831. Mn/Fe_SOD_N.
    [Graphical view ]
    PANTHERi PTHR11404. PTHR11404. 1 hit.
    Pfami PF02777. Sod_Fe_C. 1 hit.
    PF00081. Sod_Fe_N. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF000349. SODismutase. 1 hit.
    PRINTSi PR01703. MNSODISMTASE.
    SUPFAMi SSF46609. SSF46609. 1 hit.
    SSF54719. SSF54719. 1 hit.
    PROSITEi PS00088. SOD_MN. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Identification of the haloarchaeal phasin (PhaP) that functions in polyhydroxyalkanoate accumulation and granule formation in Haloferax mediterranei."
      Cai S., Cai L., Liu H., Liu X., Han J., Zhou J., Xiang H.
      Appl. Environ. Microbiol. 78:1946-1952(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: CGMCC 1.2087Imported.
      Plasmid: pHM500
    2. "Complete genome sequence of the metabolically versatile halophilic archaeon Haloferax mediterranei, a poly(3-hydroxybutyrate-co-3-hydroxyvalerate) producer."
      Han J., Zhang F., Hou J., Liu X., Li M., Liu H., Cai L., Zhang B., Chen Y., Zhou J., Hu S., Xiang H.
      J. Bacteriol. 194:4463-4464(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 33500 / DSM 1411 / JCM 8866 / NBRC 14739 / NCIMB 2177 / R-4Imported, CGMCC 1.2087Imported, pHM500Imported and Plasmid pHM500Imported.
      Plasmid: pHM500
    3. Becker E.A., Seitzer P., Tritt A., Larsen D., Yao A., Wu D., Darling A., Eisen J.A., Facciotti M.T.
      Submitted (NOV-2012) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: ATCC 33500Imported.
    4. Wang L., Yang H., Xiang H.
      Submitted (MAY-2014) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: CGMCC 1.2087.
      Plasmid: pHM500

    Entry informationi

    Entry nameiI3RBB8_HALMT
    AccessioniPrimary (citable) accession number: I3RBB8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 5, 2012
    Last sequence update: September 5, 2012
    Last modified: October 1, 2014
    This is version 15 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, PlasmidImported, Reference proteomeImported

    External Data

    Dasty 3