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I3R375 (I3R375_HALMT) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 18. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
EC=4.1.1.39 EMBL EMA03454.1

Ribulose-bisphosphate carboxylase large chain EMBL AFK18685.1
EC=4.1.1.39 EMBL AFK18685.1
Gene names
Name:rbcL EMBL AFK18685.1
Ordered Locus Names:HFX_0967 EMBL AFK18685.1
ORF Names:C439_05630 EMBL EMA03454.1
OrganismHaloferax mediterranei (strain ATCC 33500 / DSM 1411 / JCM 8866 / NBRC 14739 / NCIMB 2177 / R-4) (Halobacterium mediterranei) [Complete proteome] [HAMAP] EMBL AFK18685.1
Taxonomic identifier523841 [NCBI]
Taxonomic lineageArchaeaEuryarchaeotaHalobacteriaHalobacterialesHalobacteriaceaeHaloferax

Protein attributes

Sequence length429 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the RuBisCO large chain family. RuleBase RU004228

Ontologies

Keywords
   Molecular functionLyase EMBL AFK18685.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarbon fixation

Inferred from electronic annotation. Source: InterPro

   Molecular_functionmagnesium ion binding

Inferred from electronic annotation. Source: InterPro

ribulose-bisphosphate carboxylase activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
I3R375 [UniParc].

Last modified September 5, 2012. Version 1.
Checksum: C183A31F88DEC184

FASTA42945,707
        10         20         30         40         50         60 
MGITYEDFLD LEYEPTDEDL VCTFRIDPAT GMSMEAAASR VASESSNGTW AALQPGADFT 

        70         80         90        100        110        120 
DMGATTFSIA ERSSAGSQTG SDDIDGGNIQ VAYPAGLFEP GNMPQVLSCI AGNIMGMKAV 

       130        140        150        160        170        180 
DSIRLMDCEW PEPVVSSYPG PLYGSSVREE IFGVSDRPIT ATVPKPKVGL STAEHAQVGY 

       190        200        210        220        230        240 
DAWVGGVDLL KDDENLTDQD FNPFADRLTE SLSLRDDAED ETGEKKSYLI NVTADTQTML 

       250        260        270        280        290        300 
DRVDEVAAQG GEYVMVDIIT AGWASLQTVR ERTEKHGLAI HAHRAMHAAF DRMPTHGVSM 

       310        320        330        340        350        360 
RVLAQISRLC GVDQLHTGTA GLGKLANEDT VGINDWLKGD LYGRNDVLPV ASGGLHPGLL 

       370        380        390        400        410        420 
PDLLDATGTN TCIQLGGGIH GHPDGTRSGA IALRSAIDAY VEGKSITEAA EETPELAVAL 


DKWGTETPR 

« Hide

References

« Hide 'large scale' references
[1]"Identification of the haloarchaeal phasin (PhaP) that functions in polyhydroxyalkanoate accumulation and granule formation in Haloferax mediterranei."
Cai S., Cai L., Liu H., Liu X., Han J., Zhou J., Xiang H.
Appl. Environ. Microbiol. 78:1946-1952(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: CGMCC 1.2087 EMBL AFK18685.1.
[2]"Complete Genome Sequence of the Metabolically Versatile Halophilic Archaeon Haloferax mediterranei, a Poly(3-Hydroxybutyrate-co-3-Hydroxyvalerate) Producer."
Han J., Zhang F., Hou J., Liu X., Li M., Liu H., Cai L., Zhang B., Chen Y., Zhou J., Hu S., Xiang H.
J. Bacteriol. 194:4463-4464(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 33500 / DSM 1411 / JCM 8866 / NBRC 14739 / NCIMB 2177 / R-4 and CGMCC 1.2087 EMBL AFK18685.1.
[3]Becker E.A., Seitzer P., Tritt A., Larsen D., Yao A., Wu D., Darling A., Eisen J.A., Facciotti M.T.
Submitted (NOV-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: ATCC 33500 EMBL EMA03454.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001868 Genomic DNA. Translation: AFK18685.1.
AOLO01000006 Genomic DNA. Translation: EMA03454.1.
RefSeqYP_006348672.1. NC_017941.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFK18685; AFK18685; HFX_0967.
EMA03454; EMA03454; C439_05630.
GeneID13027133.
KEGGhme:HFX_0967.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01601.
OMAVIVTFRV.

Enzyme and pathway databases

BioCycHMED523841:GLDU-961-MONOMER.

Family and domain databases

Gene3D3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
InterProIPR017712. RuBisCO_III.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
IPR017444. RuBisCO_lsu_N.
[Graphical view]
PfamPF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view]
SUPFAMSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
TIGRFAMsTIGR03326. rubisco_III. 1 hit.
ProtoNetSearch...

Entry information

Entry nameI3R375_HALMT
AccessionPrimary (citable) accession number: I3R375
Entry history
Integrated into UniProtKB/TrEMBL: September 5, 2012
Last sequence update: September 5, 2012
Last modified: July 9, 2014
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)