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Protein
Submitted name:

PQ loop repeat containing 1

Gene

PQLC1

Organism
Ictidomys tridecemlineatus (Thirteen-lined ground squirrel) (Spermophilus tridecemlineatus)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Names & Taxonomyi

Protein namesi
Submitted name:
PQ loop repeat containing 1Imported
Gene namesi
Name:PQLC1Imported
OrganismiIctidomys tridecemlineatus (Thirteen-lined ground squirrel) (Spermophilus tridecemlineatus)Imported
Taxonomic identifieri43179 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciuromorphaSciuridaeXerinaeMarmotiniIctidomys
Proteomesi
  • UP000005215 Componenti: Unassembled WGS sequence

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei16 – 34HelicalSequence analysisAdd BLAST19
Transmembranei46 – 70HelicalSequence analysisAdd BLAST25

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

STRINGi43179.ENSSTOP00000020048.

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG2913. Eukaryota.
ENOG4111FM2. LUCA.
GeneTreeiENSGT00390000002381.
InParanoidiI3N6Q2.
OMAiLYRNYQN.
OrthoDBiEOG091G0IP7.
TreeFamiTF313072.

Family and domain databases

InterProiView protein in InterPro
IPR006603. PQ-loop_rpt.
PfamiView protein in Pfam
PF04193. PQ-loop. 2 hits.
SMARTiView protein in SMART
SM00679. CTNS. 2 hits.

Sequencei

Sequence statusi: Complete.

I3N6Q2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEAEGLDWLL VPLHRLVSWG AAAAMVFGGV VPYIPQYRDI RRTQNADGFS
60 70 80 90 100
THVCLVLLVA NILRILFWFG RRFESPLLWQ SIVMTLTMLL MLKLCTEVRV
110 120 130 140 150
ANELNLKRRS FAAGDSRDEE PKAPPRRSYL DFDPHHFWHW SSFGDYVQCV
160 170 180 190 200
LAFTGVAGYV TYLSIDSALF VETLGFLAVL TEAMLGVPQL YRNYCHRSTE
210 220 230 240 250
GMSLKMVLMW TSGDTFKTAY FLLNGAPLQF SVCGLLQVLV DLAILGQAYA
260 270
FACHPQKPAP HTAHPASAKA L
Length:271
Mass (Da):30,421
Last modified:July 11, 2012 - v1
Checksum:i26BD821341D15E72
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AGTP01077210 Genomic DNA. No translation available.
RefSeqiXP_005334423.1. XM_005334366.2.

Genome annotation databases

EnsembliENSSTOT00000030032; ENSSTOP00000020048; ENSSTOG00000024050.
GeneIDi101955999.

Similar proteinsi

Entry informationi

Entry nameiI3N6Q2_ICTTR
AccessioniPrimary (citable) accession number: I3N6Q2
Entry historyiIntegrated into UniProtKB/TrEMBL: July 11, 2012
Last sequence update: July 11, 2012
Last modified: August 30, 2017
This is version 25 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported